View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4680-Insertion-3 (Length: 426)
Name: NF4680-Insertion-3
Description: NF4680
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4680-Insertion-3 |
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Alignment Details
Target: chr8 (Bit Score: 261; Significance: 1e-145; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 8 - 287
Target Start/End: Original strand, 16758318 - 16758598
Alignment:
| Q |
8 |
tttagatcataattatgctgtgcagaatgctagatgcacatatcagttgaccaatggtaaagaataatgaaagatccacaatatttaattgcatcaatcc |
107 |
Q |
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| T |
16758318 |
tttagatcataattatgctgtgcagaatgctagatgcacatatcagttgaccaatggtaaagaataatgaaagatccacagtatttaattgcatcaatcc |
16758417 |
T |
|
| Q |
108 |
tcaaagaagaagaaattgttggtagcgttcgctcatttcgactatacgtggtctttgaatgaccaattcaaccactgttgat-aaaaaagaatattgaat |
206 |
Q |
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|| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
16758418 |
tcgaagaagaagaaattgttggtagcgtttgctcatttcgactatacgtggtctttgaatgaccaattcaaccactgttgataaaaaaagaatattgaat |
16758517 |
T |
|
| Q |
207 |
ttgatgaaaaccacaatacactccttactcgaattaaagtatcgacaaaatgagtcactatcaaatattccatcaaacaca |
287 |
Q |
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| T |
16758518 |
ttgatgaaaaccacaatacactccttactcgaattaaagtatcgacaaaatgagtcactatcaaatattccatcaaacaca |
16758598 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 368 - 426
Target Start/End: Original strand, 16758679 - 16758737
Alignment:
| Q |
368 |
tctcacacaattattagaactcaaacctgcaaataatggaggcccaaaaacatagatta |
426 |
Q |
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| T |
16758679 |
tctcacacaattattagaactcaaacctgaaaataatggaggcaccaaaacatagatta |
16758737 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 192 - 239
Target Start/End: Complemental strand, 2611407 - 2611360
Alignment:
| Q |
192 |
aaaagaatattgaatttgatgaaaaccacaatacactccttactcgaa |
239 |
Q |
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| T |
2611407 |
aaaagaatgttaaatttggtgataaccacaatacactccttactcgaa |
2611360 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 66; Significance: 5e-29; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 192 - 285
Target Start/End: Original strand, 47837518 - 47837611
Alignment:
| Q |
192 |
aaaagaatattgaatttgatgaaaaccacaatacactccttactcgaattaaagtatcgacaaaatgagtcactatcaaatattccatcaaaca |
285 |
Q |
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| T |
47837518 |
aaaagaatgttgaatttgatgagaaccacaatacactccttactcaaattacaatatcgacaaaatgagtcactctcaaatatttcatcaaaca |
47837611 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 141 - 178
Target Start/End: Complemental strand, 40866156 - 40866119
Alignment:
| Q |
141 |
catttcgactatacgtggtctttgaatgaccaattcaa |
178 |
Q |
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| T |
40866156 |
catttcgactatatgtggtctttgaatgaccaattcaa |
40866119 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 134 - 182
Target Start/End: Complemental strand, 23410619 - 23410570
Alignment:
| Q |
134 |
gttcgctcatttcgactatacgtggtctttg-aatgaccaattcaaccac |
182 |
Q |
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| T |
23410619 |
gttcgctcatttcgactataggtggtcattgaaatgaccgattcaaccac |
23410570 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 59 - 103
Target Start/End: Original strand, 34452707 - 34452751
Alignment:
| Q |
59 |
caatggtaaagaataatgaaagatccacaatatttaattgcatca |
103 |
Q |
| |
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| T |
34452707 |
caatggtcaaaaataataaaagatccacaatttttaattgcatca |
34452751 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 51; Significance: 4e-20; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 121 - 293
Target Start/End: Complemental strand, 11621939 - 11621751
Alignment:
| Q |
121 |
aattgttggtagcgttcgctcatttcgactatacgtggtctttgaatgaccaattcaaccac-tgttgataa---------------aaaagaatattga |
204 |
Q |
| |
|
|||||||| ||| ||| |||||||||||||||| ||||||||||||||||||||||||||| |||||| || | || |||||||| |
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| T |
11621939 |
aattgttgatagtgtttgctcatttcgactataggtggtctttgaatgaccaattcaaccatatgttgagaagtttttaataagataacaaaaatattga |
11621840 |
T |
|
| Q |
205 |
atttgatgaaaaccacaatacactccttactcgaattaaagtatcgacaaaatgagtcactatcaaatattccatcaaacacataaagt |
293 |
Q |
| |
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||||| || ||||||||||||||||||||||| ||||| | |||| |||||| |||||| ||||||||||| | ||||||| |||||| |
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| T |
11621839 |
atttggtggaaaccacaatacactccttactcaaattacattatcaacaaaacgagtcattatcaaatatttcggcaaacacgtaaagt |
11621751 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 67 - 115
Target Start/End: Original strand, 8025156 - 8025204
Alignment:
| Q |
67 |
aagaataatgaaagatccacaatatttaattgcatcaatcctcaaagaa |
115 |
Q |
| |
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| T |
8025156 |
aagaataatgaaagatccacaatctttaattgcatttatcctcaaagaa |
8025204 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 67 - 102
Target Start/End: Complemental strand, 46309849 - 46309814
Alignment:
| Q |
67 |
aagaataatgaaagatccacaatatttaattgcatc |
102 |
Q |
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||||||||||||||||||||||| |||||||||||| |
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| T |
46309849 |
aagaataatgaaagatccacaatttttaattgcatc |
46309814 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 67 - 106
Target Start/End: Complemental strand, 27070491 - 27070452
Alignment:
| Q |
67 |
aagaataatgaaagatccacaatatttaattgcatcaatc |
106 |
Q |
| |
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||||||||||||| ||||||||| |||||||||||||||| |
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| T |
27070491 |
aagaataatgaaatatccacaatctttaattgcatcaatc |
27070452 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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