View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4680-Insertion-4 (Length: 365)

Name: NF4680-Insertion-4
Description: NF4680
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4680-Insertion-4
NF4680-Insertion-4
[»] chr5 (1 HSPs)
chr5 (7-365)||(7723011-7723359)


Alignment Details
Target: chr5 (Bit Score: 300; Significance: 1e-168; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 300; E-Value: 1e-168
Query Start/End: Original strand, 7 - 365
Target Start/End: Original strand, 7723011 - 7723359
Alignment:
Q  7 atgtacatgtctccatttgcaattcacgacaacgtggactgcaggtgctgattagtatttcgacattttattatcttcaaacactacaagacaacaattc 106  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  7723011 atgtacatgtctccatttgcaattcacgacaacgtggactgcaggtgctgactagtatttcgacattttattatcttcaaacactacaagacaacaattc 7723110  T
Q  107 actcttctctactctactctactctnnnnnnncccttcaaatcattcattttccattactctttttcacaaagaatgatgcatcgttcatctcaagggca 206  Q
    ||||||||||||||||    ||          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7723111 actcttctctactctaaaaaac----------cccttcaaatcattcattttccattactctttttcacaaagaatgatgcatcgttcatctcaagggca 7723200  T
Q  207 acacgtgatgggacactgttcatgtggtatgtttcatggacaaaacaactcattctcaatgttattctcctcctctacaccttatgatcatgaacctgaa 306  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7723201 acacgtgatgggacactgttcatgtggtatgtttcatggacaaaacaactcattctcaatgttattctcctcctctacaccttatgatcatgaacctgaa 7723300  T
Q  307 acatattgcttcactccgaattcttcatcttcttctgttgattgtactctttcacttgg 365  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  7723301 acatattgcttcactcctaattcttcatcttcttctgttgattgtactctttcacttgg 7723359  T

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