View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4680-Insertion-5 (Length: 146)
Name: NF4680-Insertion-5
Description: NF4680
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4680-Insertion-5 |
 | |
|
| [»] chr8 (1 HSPs) |
| |
|
Alignment Details
Target: chr8 (Bit Score: 135; Significance: 1e-70; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 135; E-Value: 1e-70
Query Start/End: Original strand, 8 - 146
Target Start/End: Complemental strand, 24777256 - 24777118
Alignment:
| Q |
8 |
caatccactccctccaaaagcatacgtacattctttcaaccactcaacaaccctattcctcccaaaaaccctgatactgaatctcctatcaagcttcctc |
107 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24777256 |
caatccactccctccaaaagcatacgtacattctttcaaccactcaacagccctattcctcccaaaaaccctgatactgaatctcctatcaagcttcctc |
24777157 |
T |
|
| Q |
108 |
accaaacatcaacttcttcgacttcttctccatcttctt |
146 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24777156 |
accaaacatcaacttcttcgacttcttctccatcttctt |
24777118 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University