View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4680_high_11 (Length: 314)
Name: NF4680_high_11
Description: NF4680
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4680_high_11 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 257; Significance: 1e-143; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 18 - 299
Target Start/End: Complemental strand, 15371685 - 15371402
Alignment:
| Q |
18 |
gtttggtagggagcaaaataaattgtatgcgaattcaatcgctataatagccgacatatatagaagcatgactttcatagctgtgaaaagttccaaataa |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15371685 |
gtttggtagggagcaaaataaattgtatgcgaattcgattgctataatagccgacatatatagaagcatgactttcatagctgtgaaaagttccaaataa |
15371586 |
T |
|
| Q |
118 |
ggtataaaaaa--tggtaaattgatggcatgtagacatagcaaatggacaaatagagtgacacatttgaagtgtgatttagtggctagagttagcttaga |
215 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15371585 |
ggtataaaaaaaatggtaaattgatggcatgtagacatagcaaatggacaaatagagtgatacatttgaagtgtgatttagtggctagagttagcttaga |
15371486 |
T |
|
| Q |
216 |
tatagctggggtggggggaagaaggtgcatgtgatcaaaagtggaaacgtaagatgttggcattgaatgagagtcaagatgatg |
299 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
15371485 |
tatagctggggtggggggaagaaggtgcatgtgatcaaaagtggaaacgtaagatgttggcattgaatgagggtcaagatgatg |
15371402 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University