View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4680_high_12 (Length: 299)
Name: NF4680_high_12
Description: NF4680
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4680_high_12 |
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Alignment Details
Target: chr4 (Bit Score: 263; Significance: 1e-147; HSPs: 7)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 263; E-Value: 1e-147
Query Start/End: Original strand, 1 - 283
Target Start/End: Complemental strand, 27571129 - 27570847
Alignment:
| Q |
1 |
catactacagacatatctcatgtttcgtcagattgacaattcacgatatacatcagccaactattatctgatatatctgcaatttgtaaatcatgagtag |
100 |
Q |
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| T |
27571129 |
catactacagacatatctcatgtttcttcagattgacaatgcacaatatacatcagccaactattatctgatatatcttcaatttgtaaatcatgagtag |
27571030 |
T |
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| Q |
101 |
gacctgaattatagatcagaaacagtgttaggaggcaagaagagaaccaatattaaacgcaagatcacaaacgactatgaaccacgttttatatttttgc |
200 |
Q |
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| T |
27571029 |
gacctgaattatagatcagaagcagtgttaggaggcaagaagagaaccaatattaaacgcaagatcacaaacgactatgaaccacgttttatatttttgc |
27570930 |
T |
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| Q |
201 |
attttgttataactaatccaatggtagacatgctctcgacatctcacatgtaatttcttcgaattgacaatgcagctaatata |
283 |
Q |
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| T |
27570929 |
attttgttataactaatccaatggtagacatgctctcgacatctcacatgtaatttcttcgaattgacaatgcagctaatata |
27570847 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 84 - 200
Target Start/End: Original strand, 27425216 - 27425332
Alignment:
| Q |
84 |
ttgtaaatcatgagtaggacctgaattatagatcagaaacagtgttaggaggcaagaagagaaccaatattaaacgcaagatcacaaacgactatgaacc |
183 |
Q |
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||||||| | || ||||||||||| |||||| |||||| ||||||||||||| || | |||||| |||||| ||| ||||||||||||| || | ||||| |
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| T |
27425216 |
ttgtaaagcttgcgtaggacctgatttatagttcagaagcagtgttaggaggaaaaacgagaacaaatattgaacacaagatcacaaaccaccaggaacc |
27425315 |
T |
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| Q |
184 |
acgttttatatttttgc |
200 |
Q |
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| T |
27425316 |
acaatttatatttttgc |
27425332 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 71 - 167
Target Start/End: Original strand, 27414960 - 27415055
Alignment:
| Q |
71 |
atatatctgcaatttgtaaatcatgagtaggacctgaattatagatcagaaacagtgttaggaggcaagaagagaaccaatattaaacgcaagatca |
167 |
Q |
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| T |
27414960 |
atatatgtgcaacttgtaaagcttgagtaggacctgatttatagctcagaaacagtgtgaggagg-aaaaagagaaccaattttgaacacaagatca |
27415055 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 121 - 202
Target Start/End: Original strand, 27422645 - 27422726
Alignment:
| Q |
121 |
aacagtgttaggaggcaagaagagaaccaatattaaacgcaagatcacaaacgactatgaaccacgttttatatttttgcat |
202 |
Q |
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|||||||| |||||| ||||||||||| ||||| ||| ||||| || | | |||||||||||| |||||||||||||||| |
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| T |
27422645 |
aacagtgtgaggaggagagaagagaaccgatattgaacacaagaacatgagccactatgaaccacattttatatttttgcat |
27422726 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 137 - 194
Target Start/End: Complemental strand, 27566634 - 27566577
Alignment:
| Q |
137 |
aagaagagaaccaatattaaacgcaagatcacaaacgactatgaaccacgttttatat |
194 |
Q |
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| T |
27566634 |
aagaagagaaccaatatagaacacaagatcacaaaccactataaaccacattttatat |
27566577 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 197 - 283
Target Start/End: Original strand, 27419680 - 27419763
Alignment:
| Q |
197 |
ttgcattttgttataactaatccaatggtagacatgctctcgacatctcacatgtaatttcttcgaattgacaatgcagctaatata |
283 |
Q |
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|||||||| | |||| ||||||||| ||||||||||| | ||||||||||||| ||||||| |||||||| |||||| |||||| |
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| T |
27419680 |
ttgcatttgggtatagataatccaattgtagacatgctttagacatctcacatg---tttcttctaattgacattgcagcaaatata |
27419763 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 208 - 249
Target Start/End: Original strand, 27412020 - 27412061
Alignment:
| Q |
208 |
tataactaatccaatggtagacatgctctcgacatctcacat |
249 |
Q |
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|||| |||||||||||||||||||||| | |||||||||||| |
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| T |
27412020 |
tatagctaatccaatggtagacatgctttagacatctcacat |
27412061 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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