View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4680_high_9 (Length: 325)
Name: NF4680_high_9
Description: NF4680
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4680_high_9 |
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| [»] scaffold0651 (2 HSPs) |
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Alignment Details
Target: scaffold0651 (Bit Score: 275; Significance: 1e-154; HSPs: 2)
Name: scaffold0651
Description:
Target: scaffold0651; HSP #1
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 22 - 312
Target Start/End: Complemental strand, 4438 - 4148
Alignment:
| Q |
22 |
atcatataatatcatgttctaaattgttcaatgccaacaggttgctgagatgctagtgaagagtggtgtaacagaagcagtaatattgataagggtgatt |
121 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
4438 |
atcatataatatcatgttctaaattgttcaatgccaacaggttgctgagatgctagtgaagagcggtgtaacagaagcagtaatattgataagggtgatt |
4339 |
T |
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| Q |
122 |
ctatggcttctggcaacgaggttgggcactttgttgatttgtggtttgctctgtcttagcaagaaatggccatttatcaacaacttctcaagcatttctt |
221 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||| |
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| T |
4338 |
ctatggcttctggcaacgaggttgggcactttattgatttgtggtttgctctgtcttagcaagaaatggccatttatcaacaacttctcaagcttgtctt |
4239 |
T |
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| Q |
222 |
tggataaaagagaaaagattgtgcagagggctctcaagcttaggttcctcactccttttagactcgcattcgcttacatcaaagtcctatg |
312 |
Q |
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| T |
4238 |
tggataaaagagaaaagattgtgcagagggctctcaagcttaggttcctcactccttttagactcgcattcgcttacatcaaagtcctatg |
4148 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0651; HSP #2
Raw Score: 168; E-Value: 5e-90
Query Start/End: Original strand, 51 - 314
Target Start/End: Original strand, 1416 - 1679
Alignment:
| Q |
51 |
aatgccaacaggttgctgagatgctagtgaagagtggtgtaacagaagcagtaatattgataagggtgattctatggcttctggcaacgaggttgggcac |
150 |
Q |
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| T |
1416 |
aatggcaacaggttgctgagatgttcgagaagagggctgtaatagaagcagtaatattgattagggtgattctgtggcttctagcaacaaggttgggcac |
1515 |
T |
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| Q |
151 |
tttgttgatttgtggtttgctctgtcttagcaagaaatggccatttatcaacaacttctcaagcatttctttggataaaagagaaaagattgtgcagagg |
250 |
Q |
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| T |
1516 |
tttgttgatttgtggtttgctatgtctcagtaagaaatggccatttatcaacaacttctcaagcttgtctttggataaaagagaaaagattgtacaaagg |
1615 |
T |
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| Q |
251 |
gctctcaagcttaggttcctcactccttttagactcgcattcgcttacatcaaagtcctatgcc |
314 |
Q |
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| T |
1616 |
ggtctcaagcataaattcctcactccttttagactcgcattcgtttacatcaaaatcctatgcc |
1679 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 275; Significance: 1e-154; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 22 - 312
Target Start/End: Original strand, 31319232 - 31319522
Alignment:
| Q |
22 |
atcatataatatcatgttctaaattgttcaatgccaacaggttgctgagatgctagtgaagagtggtgtaacagaagcagtaatattgataagggtgatt |
121 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
31319232 |
atcatataatatcatgttctaaattgttcaatgccaacaggttgctgagatgctagtgaagagcggtgtaacagaagcagtaatattgataagggtgatt |
31319331 |
T |
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| Q |
122 |
ctatggcttctggcaacgaggttgggcactttgttgatttgtggtttgctctgtcttagcaagaaatggccatttatcaacaacttctcaagcatttctt |
221 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||| |
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| T |
31319332 |
ctatggcttctggcaacgaggttgggcactttattgatttgtggtttgctctgtcttagcaagaaatggccatttatcaacaacttctcaagcttgtctt |
31319431 |
T |
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| Q |
222 |
tggataaaagagaaaagattgtgcagagggctctcaagcttaggttcctcactccttttagactcgcattcgcttacatcaaagtcctatg |
312 |
Q |
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| T |
31319432 |
tggataaaagagaaaagattgtgcagagggctctcaagcttaggttcctcactccttttagactcgcattcgcttacatcaaagtcctatg |
31319522 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 168; E-Value: 5e-90
Query Start/End: Original strand, 51 - 314
Target Start/End: Original strand, 31331502 - 31331765
Alignment:
| Q |
51 |
aatgccaacaggttgctgagatgctagtgaagagtggtgtaacagaagcagtaatattgataagggtgattctatggcttctggcaacgaggttgggcac |
150 |
Q |
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|||| |||||||||||||||||| | | |||||| | ||||| |||||||||||||||||| ||||||||||| |||||||| ||||| ||||||||||| |
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| T |
31331502 |
aatggcaacaggttgctgagatgttcgagaagagggctgtaatagaagcagtaatattgattagggtgattctgtggcttctagcaacaaggttgggcac |
31331601 |
T |
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| Q |
151 |
tttgttgatttgtggtttgctctgtcttagcaagaaatggccatttatcaacaacttctcaagcatttctttggataaaagagaaaagattgtgcagagg |
250 |
Q |
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| T |
31331602 |
tttgttgatttgtggtttgctatgtctcagtaagaaatggccatttatcaacaacttctcaagcttgtctttggataaaagagaaaagattgtacaaagg |
31331701 |
T |
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| Q |
251 |
gctctcaagcttaggttcctcactccttttagactcgcattcgcttacatcaaagtcctatgcc |
314 |
Q |
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| T |
31331702 |
ggtctcaagcataaattcctcactccttttagactcgcattcgtttacatcaaaatcctatgcc |
31331765 |
T |
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