View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4680_low_1 (Length: 498)

Name: NF4680_low_1
Description: NF4680
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4680_low_1
NF4680_low_1
[»] chr1 (24 HSPs)
chr1 (12-482)||(35262724-35263196)
chr1 (20-465)||(35247995-35248447)
chr1 (23-225)||(35270406-35270610)
chr1 (19-206)||(35276531-35276712)
chr1 (12-210)||(35147351-35147540)
chr1 (16-203)||(35199926-35200113)
chr1 (12-210)||(35190359-35190548)
chr1 (24-189)||(35224921-35225086)
chr1 (21-189)||(35295848-35296016)
chr1 (12-210)||(45525454-45525649)
chr1 (42-186)||(8638909-8639056)
chr1 (43-121)||(35252152-35252230)
chr1 (30-189)||(35219069-35219231)
chr1 (273-334)||(35251966-35252027)
chr1 (41-121)||(35208211-35208289)
chr1 (31-86)||(35212077-35212132)
chr1 (21-119)||(34309427-34309525)
chr1 (40-86)||(35194604-35194650)
chr1 (31-84)||(35476415-35476468)
chr1 (54-119)||(45531643-45531708)
chr1 (22-86)||(35189422-35189486)
chr1 (32-92)||(35205014-35205074)
chr1 (420-482)||(35267329-35267390)
chr1 (34-163)||(35474028-35474156)
[»] chr3 (5 HSPs)
chr3 (32-75)||(23331914-23331957)
chr3 (42-86)||(899766-899810)
chr3 (37-81)||(53924271-53924315)
chr3 (22-84)||(17664560-17664622)
chr3 (22-84)||(19246963-19247025)
[»] chr2 (2 HSPs)
chr2 (22-75)||(33138612-33138665)
chr2 (19-71)||(18558741-18558792)
[»] chr7 (1 HSPs)
chr7 (22-119)||(38631962-38632059)


Alignment Details
Target: chr1 (Bit Score: 415; Significance: 0; HSPs: 24)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 415; E-Value: 0
Query Start/End: Original strand, 12 - 482
Target Start/End: Complemental strand, 35263196 - 35262724
Alignment:
Q  12 acagagcagtaggattggaacgtcctagtgtgagaagcgatgggtggttggagattgagatgggggagttcttcagtttaggcatagaaaatgaagaagt 111  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  35263196 acagagcagtaggattgcaacgtcctagtgtgagaagcgatgggtggttggagattgagatgggggagttcttcagttcaggcatagaaaatgaagaagt 35263097  T
Q  112 ccagatgaatttgttggagataaaggctggtaattggaagagtggtctctttcttgaaggaatagaaattaggcctaaataacacaattaagcagcattt 211  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35263096 ccagatgaatttgttagagataaaggctggtaattggaagagtggtctctttcttgaaggaatagaaattaggcctaaataacacaattaagcagcattt 35262997  T
Q  212 actatactatgcaaaaggggt----tgtcttggttggcagaataatgtttcaagagttggaagtcccaacttttcaacatactatatattattgttccaa 307  Q
    ||||||||||||||  |||||    |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  35262996 actatactatgcaa--ggggtcttgtgtcttggttggcagaataatgtttctagagttggaagtcccaacttttcaacatactatatattattgttccaa 35262899  T
Q  308 actgtttcttcgtatagtatatacacactttatattgcttagtgctgttcagtatattgggatacatgcgttgtggatactcgcctcctgttgaatgtta 407  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||| ||||||||||||||||||||||||||||    
T  35262898 actgtttcttcgtatagtatatacacactttatattgcttagtgttgttcagtatattgagatacatgcgtcgtggatactcgcctcctgttgaatgtta 35262799  T
Q  408 caactattaaatatattgtgatgcaatatgaatttgctattttattgatttggaacccgtaacggtgatttaaaa 482  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  35262798 caactattaaatatattgtgatgcaatatgaatttgctattttattgatttggaacccttaacggtgatttaaaa 35262724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 20 - 465
Target Start/End: Complemental strand, 35248447 - 35247995
Alignment:
Q  20 gtaggattggaacgtcctagtgtgagaagcgatgggtggttggagattgagatgggggagttcttcagtttaggcatagaaaatgaagaagtccagatga 119  Q
    ||||||||| || || ||| ||||||||||||||||||||| ||||||||||||||||||||||||| ||||||| ||||||||||||   || ||||||    
T  35248447 gtaggattgcaaagttctattgtgagaagcgatgggtggtttgagattgagatgggggagttcttcaatttaggcctagaaaatgaag---tcaagatga 35248351  T
Q  120 atttgtt---ggagataaaggctggtaattggaagagtggtctctttcttgaaggaatagaaattaggcctaaataacacaattaagcagcatttactat 216  Q
    || | ||   |||||| |||| ||||||   ||| |   |||||||  |||||||||||||| |||| ||||| ||| ||||||||||| |||| |||      
T  35248350 atgtttttatggagatgaaggatggtaaccagaatacacgtctcttatttgaaggaatagaagttagacctaagtaatacaattaagcaacattcactga 35248251  T
Q  217 actatgcaaaaggggt----tgtcttggttggcagaataatgtttcaagagttggaagtcccaacttttcaacatactatatattattgttccaaactgt 312  Q
    |||||||||  |||||    |||||||| |||||||| || |||| |||| ||| |||| |||||||||||||||| ||||||||||||||| ||||| |    
T  35248250 actatgcaa--ggggtcttatgtcttggatggcagaacaacgtttgaagatttg-aagttccaacttttcaacatattatatattattgttctaaactct 35248154  T
Q  313 ttcttcgtatagtatatacacactttatattgcttagtgctgttcagtatattgggatacatgcgttgtggatactcgcctc-------ctgttgaatgt 405  Q
    ||||| ||| | ||||| |||||||||||||||||| || | ||||||||| | |||||  |  ||||||| ||   |||||       ||||||| |||    
T  35248153 ttctttgtaaaatatattcacactttatattgcttattgttcttcagtatactcggatatctttgttgtgggtatctgcctcgtgttgtctgttgattgt 35248054  T
Q  406 tacaactattaaatatattgtgatgcaatatgaatttgctattttattgatttggaaccc 465  Q
    | |||||||  |||||||||||||||| ||||||||||||| ||||||||||||||||||    
T  35248053 tccaactatataatatattgtgatgcattatgaatttgcta-tttattgatttggaaccc 35247995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 118; E-Value: 5e-60
Query Start/End: Original strand, 23 - 225
Target Start/End: Complemental strand, 35270610 - 35270406
Alignment:
Q  23 ggattggaacgtcctagtgtgagaagcgatgggtggttggagattgagatgggggagttcttcagtttaggcatagaaaatgaagaagtccagatgaatt 122  Q
    |||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||     
T  35270610 ggattgcaacgtcctagtgtgagaagtgatgggtggttggagattgagatgggggagttcttcaattcaggcatagaaaatgaagaagtccagatgaatg 35270511  T
Q  123 tgttggagataaaggctggtaattggaagagtggtctctttcttgaaggaatagaaattaggcctaa--ataacacaattaagcagcatttactatacta 220  Q
    || |  ||| ||||| ||||||||||||||| |||||  ||||||||||||||||| ||||||||||  ||||||||||||| || |||| |||  ||||    
T  35270510 tgatacagacaaagggtggtaattggaagagaggtctagttcttgaaggaatagaagttaggcctaagtataacacaattaaccaacattcactgaacta 35270411  T
Q  221 tgcaa 225  Q
    |||||    
T  35270410 tgcaa 35270406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 19 - 206
Target Start/End: Complemental strand, 35276712 - 35276531
Alignment:
Q  19 agtaggattggaacgtcctagtgtgagaagcgatgggtggttggagattgagatgggggagttcttcagtttaggcatagaaaatgaagaagtccagatg 118  Q
    |||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| || |||||   ||  ||||||||| ||||||    
T  35276712 agtaggattgcaacgtcctagtgtgagaagagatgggtggttggagattgagatgggggagttcttcaattcaggca---aatgtgaagaagttcagatg 35276616  T
Q  119 aatttgttggagataaaggctggtaattggaagagtggtctctttcttgaaggaatagaaattaggcctaaataacacaattaagcag 206  Q
    ||| || |||||||||||| |||   ||||||||||||||||||||||||||| ||| ||||||||||||| |||||| |||||||||    
T  35276615 aatgtgatggagataaagggtgg---ttggaagagtggtctctttcttgaagggatataaattaggcctaagtaacaccattaagcag 35276531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 86; E-Value: 7e-41
Query Start/End: Original strand, 12 - 210
Target Start/End: Complemental strand, 35147540 - 35147351
Alignment:
Q  12 acagagcagtaggattggaacgtcctagtgtgagaagcgatgggtggttggagattgagatgggggagttcttcagtttaggcatagaaaatgaagaagt 111  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||   |||| || |||| ||||| ||| ||| ||    
T  35147540 acagagcagtaggattgcaacgtcctagtgtgagaagcgatgggtggttggagattgagatgggggag---ttcaattcaggcctagaagatggagacgt 35147444  T
Q  112 ccagatgaatttgttggagataaaggctggtaattggaagagtggtctctttcttgaaggaatagaaattaggcctaaataacacaattaagcagcatt 210  Q
    || ||||||| |   ||||| |||      |||||||||||||||||||||| |||||||||||||| |||||||||| ||| || |||||||| ||||    
T  35147443 cctgatgaatgttaaggagacaaa------taattggaagagtggtctctttgttgaaggaatagaagttaggcctaagtaagaccattaagcaacatt 35147351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 16 - 203
Target Start/End: Complemental strand, 35200113 - 35199926
Alignment:
Q  16 agcagtaggattggaacgtcctagtgtgagaagcgatgggtggttggagattgagatgggggagttcttcagtttaggcatagaaaatgaagaagtccag 115  Q
    ||||||||||||| |||| ||||||||||||||||||||||||||||||||||| || ||||||||||||| || ||||  |||| |||||||||| ||     
T  35200113 agcagtaggattgcaacgccctagtgtgagaagcgatgggtggttggagattgaaatcggggagttcttcaattcaggcgaagaagatgaagaagttcaa 35200014  T
Q  116 atgaatttgttggagataaaggctggtaattggaagagtggtctctttcttgaaggaatagaaattaggcctaaataacacaattaag 203  Q
    |||||| |   ||||| | | | |  ||||| ||||||||||||||||||||||||||||||| | |||||||| ||| |||||||||    
T  35200013 atgaatataaaggagacagatgattataattcgaagagtggtctctttcttgaaggaatagaagtcaggcctaagtaagacaattaag 35199926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 12 - 210
Target Start/End: Complemental strand, 35190548 - 35190359
Alignment:
Q  12 acagagcagtaggattggaacgtcctagtgtgagaagcgatgggtggttggagattgagatgggggagttcttcagtttaggcatagaaaatgaagaagt 111  Q
    ||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||| || |||||||||| || |||| |||||   || |||||    
T  35190548 acagagcagtaggattgcaacgtcctagtgtgagaagtgatgggtggttggagattgagatcggagagttcttcaattcaggcctagaa---gatgaagt 35190452  T
Q  112 ccagatgaatttgttggagataaaggctggtaattggaagagtggtctctttcttgaaggaatagaaattaggcctaaataacacaattaagcagcatt 210  Q
    ||| |||||| |   ||||| |||      |||||||||||| |||||||||||||||||||||||| |||||||||| ||| || ||| |||| ||||    
T  35190451 ccaaatgaatgttaaggagacaaa------taattggaagagaggtctctttcttgaaggaatagaagttaggcctaagtaagaccattcagcaacatt 35190359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 24 - 189
Target Start/End: Complemental strand, 35225086 - 35224921
Alignment:
Q  24 gattggaacgtcctagtgtgagaagcgatgggtggttggagattgagatgggggagttcttcagtttaggcatagaaaatgaagaagtccagatgaattt 123  Q
    ||||| ||||||||| ||||||||||||||| ||||| |||||||||||||| |||||||||| || |||| ||||| ||||||||||||| |||| | |    
T  35225086 gattgcaacgtcctaatgtgagaagcgatggctggttagagattgagatgggagagttcttcatttcaggcctagaagatgaagaagtccaaatgagtgt 35224987  T
Q  124 gttggagataaaggctggtaattggaagagtggtctctttcttgaaggaatagaaattaggcctaa 189  Q
      | || ||||||| |||| |||||||||| ||| ||||| |||||||||||||| ||||||||||    
T  35224986 tattgatataaagggtggtcattggaagagaggtttctttgttgaaggaatagaagttaggcctaa 35224921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 21 - 189
Target Start/End: Original strand, 35295848 - 35296016
Alignment:
Q  21 taggattggaacgtcctagtgtgagaagcgatgggtggttggagattgagatgggggagttcttcagtttaggcatagaaaatgaagaagtccagatgaa 120  Q
    |||||||| |||  |||||||||||||| |||||||||||||||||||||||||| |||||||||| || |||| ||| | ||||||||||||| ||||     
T  35295848 taggattgcaacagcctagtgtgagaagtgatgggtggttggagattgagatgggagagttcttcaattcaggcttagtagatgaagaagtccaaatgag 35295947  T
Q  121 tttgttggagataaaggctggtaattggaagagtggtctctttcttgaaggaatagaaattaggcctaa 189  Q
    | |  |||| | ||||| |||| |  ||||||  ||| | |||||||||||||||||| ||||||||||    
T  35295948 tgttatggatacaaagggtggtcaggggaagacaggtttatttcttgaaggaatagaagttaggcctaa 35296016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 12 - 210
Target Start/End: Complemental strand, 45525649 - 45525454
Alignment:
Q  12 acagagcagtaggattggaacgtcctagtgtgagaagcgatgggtggttggagattgagatgggggagttcttcagtttaggcatagaaaatgaagaagt 111  Q
    |||||| ||||||||||   |||||| |||||||||| |||||||||||||||||||||||||| |||   |||| || |||| | ||||||||||||||    
T  45525649 acagagtagtaggattgccgcgtcctggtgtgagaagtgatgggtggttggagattgagatgggagag---ttcaattcaggccttgaaaatgaagaagt 45525553  T
Q  112 ccagatgaatttgttggagataaaggctggtaattggaagagtggtctctttcttgaaggaatagaaattaggcctaaataacacaattaagcagcatt 210  Q
    |||||||| | |  | ||||||||||||||| |    ||| |   | |||||||||||||||||||| ||||||||||   | ||||||||||| ||||    
T  45525552 ccagatgagtgttatcgagataaaggctggtgagaccaaggggaatttctttcttgaaggaatagaagttaggcctaaggtagacaattaagcaacatt 45525454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 42 - 186
Target Start/End: Complemental strand, 8639056 - 8638909
Alignment:
Q  42 tgagaagcgatgggtggttggagattgagatgggggagttcttcagtttaggcatagaaaatgaagaagtccagatgaat-ttgttggagataaaggctg 140  Q
    ||||||| |||||||||||||||| ||||||||| |||||||||| || |||| ||||| ||||||||||||| |||| | ||  ||| |||||||| ||    
T  8639056 tgagaagtgatgggtggttggagactgagatgggagagttcttcaattcaggcttagaagatgaagaagtccaaatgagtattactgg-gataaaggatg 8638958  T
Q  141 g---taattggaagagtggtctctttcttgaaggaatagaaattaggcc 186  Q
    |   || ||||||||| ||| ||||| |||||||||||||| |||||||    
T  8638957 gttatacttggaagagaggtttctttgttgaaggaatagaagttaggcc 8638909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 43 - 121
Target Start/End: Complemental strand, 35252230 - 35252152
Alignment:
Q  43 gagaagcgatgggtggttggagattgagatgggggagttcttcagtttaggcatagaaaatgaagaagtccagatgaat 121  Q
    |||||| ||||||||||| ||||||||||| ||||||||||||| ||||||||||||| |||||||| |||| ||||||    
T  35252230 gagaagtgatgggtggtttgagattgagattggggagttcttcaatttaggcatagaatatgaagaaatccaaatgaat 35252152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 30 - 189
Target Start/End: Complemental strand, 35219231 - 35219069
Alignment:
Q  30 aacgtcctagtgtgagaagcgatgggtggttggagattgagatgggggagttcttcagtttaggcatagaaaatgaagaagtccagatgaat-ttgttgg 128  Q
    ||||||||||| ||||||| |||| ||||||||| | ||||||||| |||||||||| || |||| ||  | ||||||||||||| |||| | ||  |||    
T  35219231 aacgtcctagtatgagaagtgatgagtggttggaaactgagatgggagagttcttcatttcaggcttaccagatgaagaagtccaaatgagtattactgg 35219132  T
Q  129 agataaaggctgg---taattggaagagtggtctctttcttgaaggaatagaaattaggcctaa 189  Q
     |||||||| |||   | |||||||||| ||| ||||| |||||||||||||| ||||||||||    
T  35219131 -gataaaggatggttattattggaagagaggtttctttgttgaaggaatagaagttaggcctaa 35219069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 273 - 334
Target Start/End: Complemental strand, 35252027 - 35251966
Alignment:
Q  273 ccaacttttcaacatactatatattattgttccaaactgtttcttcgtatagtatatacaca 334  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||| | ||||||| ||||    
T  35252027 ccaacttctcaacatactatatattattgttccaaactgtttcttcggaaagtatatgcaca 35251966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 41 - 121
Target Start/End: Complemental strand, 35208289 - 35208211
Alignment:
Q  41 gtgagaagcgatgggtggttggagattgagatgggggagttcttcagttta-ggcatagaaaatgaagaagtccagatgaat 121  Q
    |||||||||||||||||||||||||||||||| ||||||||||||| || | ||| |||||   ||||||||||||||||||    
T  35208289 gtgagaagcgatgggtggttggagattgagattggggagttcttcaattcatggcctagaa---gaagaagtccagatgaat 35208211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 31 - 86
Target Start/End: Complemental strand, 35212132 - 35212077
Alignment:
Q  31 acgtcctagtgtgagaagcgatgggtggttggagattgagatgggggagttcttca 86  Q
    |||||| ||||||||||| |||||||||||||||||||||||||| ||||||||||    
T  35212132 acgtccgagtgtgagaagtgatgggtggttggagattgagatgggagagttcttca 35212077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 21 - 119
Target Start/End: Complemental strand, 34309525 - 34309427
Alignment:
Q  21 taggattggaacgtcctagtgtgagaagcgatgggtggttggagattgagatgggggagttcttcagtttaggcatagaaaatgaagaagtccagatga 119  Q
    |||||||| ||||||||| ||| ||||| ||||| |||||||||||||||||||| |||||||||| || | || | ||| |||||||| |||| ||||    
T  34309525 taggattgcaacgtcctaatgtaagaagtgatggatggttggagattgagatgggagagttcttcaattcaagccttgaagatgaagaaatccaaatga 34309427  T

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Target: chr1; HSP #18
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 40 - 86
Target Start/End: Complemental strand, 35194650 - 35194604
Alignment:
Q  40 tgtgagaagcgatgggtggttggagattgagatgggggagttcttca 86  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||    
T  35194650 tgtgagaagcgatgggtggttggagattgaaatgggggagttcttca 35194604  T

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Target: chr1; HSP #19
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 31 - 84
Target Start/End: Complemental strand, 35476468 - 35476415
Alignment:
Q  31 acgtcctagtgtgagaagcgatgggtggttggagattgagatgggggagttctt 84  Q
    |||||||||||||||| | |||||||||||||||||||||||||| ||||||||    
T  35476468 acgtcctagtgtgagacgtgatgggtggttggagattgagatgggagagttctt 35476415  T

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Target: chr1; HSP #20
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 54 - 119
Target Start/End: Complemental strand, 45531708 - 45531643
Alignment:
Q  54 ggtggttggagattgagatgggggagttcttcagtttaggcatagaaaatgaagaagtccagatga 119  Q
    |||||| ||||||||||||||| |||||||||| || |||| | ||||||||||||||||| ||||    
T  45531708 ggtggtgggagattgagatgggagagttcttcaattcaggccttgaaaatgaagaagtccatatga 45531643  T

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Target: chr1; HSP #21
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 22 - 86
Target Start/End: Complemental strand, 35189486 - 35189422
Alignment:
Q  22 aggattggaacgtcctagtgtgagaagcgatgggtggttggagattgagatgggggagttcttca 86  Q
    ||||||| || ||||| |||||||||| ||| |||||||||||||||  ||||||||||||||||    
T  35189486 aggattgcaatgtccttgtgtgagaagtgataggtggttggagattggaatgggggagttcttca 35189422  T

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Target: chr1; HSP #22
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 32 - 92
Target Start/End: Complemental strand, 35205074 - 35205014
Alignment:
Q  32 cgtcctagtgtgagaagcgatgggtggttggagattgagatgggggagttcttcagtttag 92  Q
    ||||||| ||||||||| |||||||||||||||||||||||||| || || |||| |||||    
T  35205074 cgtcctaatgtgagaagtgatgggtggttggagattgagatgggagattttttcaatttag 35205014  T

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Target: chr1; HSP #23
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 420 - 482
Target Start/End: Complemental strand, 35267390 - 35267329
Alignment:
Q  420 atattgtgatgcaatatgaatttgctattttattgatttggaacccgtaacggtgatttaaaa 482  Q
    ||||||||||| | |||||||||||||||| |||||||||||||||  |||||||||| ||||    
T  35267390 atattgtgatgtattatgaatttgctattt-attgatttggaaccctcaacggtgattgaaaa 35267329  T

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Target: chr1; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 34 - 163
Target Start/End: Complemental strand, 35474156 - 35474028
Alignment:
Q  34 tcctagtgtgagaagcgatgggtggttggagattgagatgggggagttcttcagtttaggcatagaaaatgaagaagtccagatgaatttgttggagata 133  Q
    ||||||||||| || ||| || |||||||| ||||||||| | ||  |||||| ||||||| ||||| ||| |||||| ||| ||| | |  | | ||||    
T  35474156 tcctagtgtgaaaa-cgaaggatggttggacattgagatgagagatatcttcaatttaggcctagaagatggagaagttcagctgagtgttattgcgata 35474058  T
Q  134 aaggctggtaattggaagagtggtctcttt 163  Q
    |||| |||| |||||||||||||| |||||    
T  35474057 aaggatggtcattggaagagtggtttcttt 35474028  T

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Target: chr3 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 32 - 75
Target Start/End: Complemental strand, 23331957 - 23331914
Alignment:
Q  32 cgtcctagtgtgagaagcgatgggtggttggagattgagatggg 75  Q
    ||||||| ||||||||||||||||||||||||||||||||||||    
T  23331957 cgtcctaatgtgagaagcgatgggtggttggagattgagatggg 23331914  T

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Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 42 - 86
Target Start/End: Original strand, 899766 - 899810
Alignment:
Q  42 tgagaagcgatgggtggttggagattgagatgggggagttcttca 86  Q
    |||||||||||||||||||||||||||||||||| ||||| ||||    
T  899766 tgagaagcgatgggtggttggagattgagatgggagagttattca 899810  T

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Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 37 - 81
Target Start/End: Original strand, 53924271 - 53924315
Alignment:
Q  37 tagtgtgagaagcgatgggtggttggagattgagatgggggagtt 81  Q
    |||| |||| |||||||||||||||||||||||||||||||||||    
T  53924271 tagtttgaggagcgatgggtggttggagattgagatgggggagtt 53924315  T

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Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 22 - 84
Target Start/End: Original strand, 17664560 - 17664622
Alignment:
Q  22 aggattggaacgtcctagtgtgagaagcgatgggtggttggagattgagatgggggagttctt 84  Q
    ||||||| ||||||||||||| ||| | ||||| |||||||||||||||||||| || |||||    
T  17664560 aggattgcaacgtcctagtgttagatgtgatggatggttggagattgagatgggagaattctt 17664622  T

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Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 22 - 84
Target Start/End: Original strand, 19246963 - 19247025
Alignment:
Q  22 aggattggaacgtcctagtgtgagaagcgatgggtggttggagattgagatgggggagttctt 84  Q
    ||||||| ||||||||||||| ||| | ||||| |||||||||||||||||||| || |||||    
T  19246963 aggattgcaacgtcctagtgttagatgtgatggatggttggagattgagatgggagaattctt 19247025  T

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Target: chr2 (Bit Score: 38; Significance: 0.000000000003; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 22 - 75
Target Start/End: Original strand, 33138612 - 33138665
Alignment:
Q  22 aggattggaacgtcctagtgtgagaagcgatgggtggttggagattgagatggg 75  Q
    ||||||| | ||||||| ||||||||| ||||||||||||||||||||||||||    
T  33138612 aggattgcagcgtcctactgtgagaagtgatgggtggttggagattgagatggg 33138665  T

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Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 19 - 71
Target Start/End: Original strand, 18558741 - 18558792
Alignment:
Q  19 agtaggattggaacgtcctagtgtgagaagcgatgggtggttggagattgaga 71  Q
    |||||||||| || |||||||||||||| | ||||||||||||||||||||||    
T  18558741 agtaggattgcaa-gtcctagtgtgagacgtgatgggtggttggagattgaga 18558792  T

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Target: chr7 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 22 - 119
Target Start/End: Complemental strand, 38632059 - 38631962
Alignment:
Q  22 aggattggaacgtcctagtgtgagaagcgatgggtggttggagattgagatgggggagttcttcagtttaggcatagaaaatgaagaagtccagatga 119  Q
    |||||||  |||| ||||||| |||| ||||||||||||||||||| | ||||| |||||||||| || || | |  || |||||||| |||||||||    
T  38632059 aggattgcgacgtgctagtgtaagaaacgatgggtggttggagattcatatgggagagttcttcacttcagaccttaaagatgaagaaatccagatga 38631962  T

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