View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4680_low_11 (Length: 325)

Name: NF4680_low_11
Description: NF4680
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4680_low_11
NF4680_low_11
[»] chr3 (8 HSPs)
chr3 (11-310)||(30719370-30719660)
chr3 (142-310)||(30707126-30707294)
chr3 (144-310)||(30701943-30702109)
chr3 (85-126)||(1502590-1502631)
chr3 (85-128)||(4946206-4946249)
chr3 (93-130)||(30367629-30367666)
chr3 (90-130)||(19730216-19730256)
chr3 (90-130)||(19750806-19750846)
[»] chr7 (9 HSPs)
chr7 (84-130)||(10893870-10893916)
chr7 (93-130)||(18750888-18750925)
chr7 (85-130)||(44172892-44172937)
chr7 (84-124)||(30013213-30013253)
chr7 (91-130)||(650531-650570)
chr7 (91-130)||(43160496-43160535)
chr7 (85-130)||(21238829-21238874)
chr7 (90-130)||(10893354-10893394)
chr7 (90-130)||(32855366-32855406)
[»] chr8 (3 HSPs)
chr8 (91-130)||(32691755-32691794)
chr8 (91-130)||(31681838-31681877)
chr8 (91-129)||(8917544-8917582)
[»] chr5 (3 HSPs)
chr5 (94-130)||(645344-645380)
chr5 (85-130)||(28322253-28322298)
chr5 (90-130)||(10358115-10358155)
[»] chr4 (8 HSPs)
chr4 (91-131)||(683063-683103)
chr4 (91-130)||(45615423-45615462)
chr4 (91-129)||(9988707-9988745)
chr4 (84-130)||(41989576-41989622)
chr4 (84-113)||(51939141-51939170)
chr4 (94-130)||(8457937-8457973)
chr4 (95-127)||(29388378-29388410)
chr4 (97-129)||(50216696-50216728)
[»] chr6 (3 HSPs)
chr6 (85-128)||(32125175-32125218)
chr6 (85-130)||(6284663-6284708)
chr6 (94-130)||(32125420-32125456)
[»] chr1 (1 HSPs)
chr1 (91-130)||(26462653-26462692)
[»] chr2 (1 HSPs)
chr2 (92-130)||(35198240-35198278)


Alignment Details
Target: chr3 (Bit Score: 240; Significance: 1e-133; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 11 - 310
Target Start/End: Original strand, 30719370 - 30719660
Alignment:
Q  11 acatcatctcaacatatgagctgaagtcataacataacaccgacacttctgatcgaagagacatccaatgtaggacacaaacacatgtgattacattcaa 110  Q
    ||||||| |||||||||||| ||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||     
T  30719370 acatcatatcaacatatgagatgaagtcataacatagcaccgacacttctgatcgaagagatatccaatgtaggacacagacacatgtgattacattca- 30719468  T
Q  111 ttacgtcattttcttaaattcagcatcaattatatagaaatgcaaaagaaaatatatagaaaaggaaaaactcacaaatatgttgagtttgccattgaaa 210  Q
            ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30719469 --------ttttcttaaattcagcatcaattatatagaaatgcaaaacaaaatatatagaaaaggaaaaactcacaaatatgttgagtttgccattgaaa 30719560  T
Q  211 gaagaagccacatttcgaataagctcctctctttgagaagaagaagatgcatcacaaacagatccataaacagaaaaacctttctctttccactcattta 310  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30719561 gaagaagccacattttgaataagctcctctctttgagaagaagaagatgcatcacaaacagatccataaacagaaaaacctttctctttccactcattta 30719660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 109; E-Value: 8e-55
Query Start/End: Original strand, 142 - 310
Target Start/End: Original strand, 30707126 - 30707294
Alignment:
Q  142 atatagaaatgcaaaagaaaatatatagaaaaggaaaaactcacaaatatgttgagtttgccattgaaagaagaagccacatttcgaataagctcctctc 241  Q
    ||||| |||||||||| ||||||||||||||| ||||||||||||| ||||||||| ||||| ||||||| |||||| || | |||||||||||||||||    
T  30707126 atatacaaatgcaaaacaaaatatatagaaaaagaaaaactcacaagtatgttgagcttgccgttgaaagcagaagcaacttgtcgaataagctcctctc 30707225  T
Q  242 tttgagaagaagaagatgcatcacaaacagatccataaacagaaaaacctttctctttccactcattta 310  Q
    ||||||||| |||||| ||||||||||| |||||||| ||||||||||| |||||||||||||||||||    
T  30707226 tttgagaaggagaagaagcatcacaaaccgatccatagacagaaaaacccttctctttccactcattta 30707294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 144 - 310
Target Start/End: Original strand, 30701943 - 30702109
Alignment:
Q  144 atagaaatgcaaaagaaaatatatagaaaaggaaaaactcacaaatatgttgagtttgccattgaaagaagaagccacatttcgaataagctcctctctt 243  Q
    |||||||||||||| |||||||||||||||| ||||||||||||  |||||||| ||||| ||||||| ||||||||| |||| || |||||| ||||||    
T  30701943 atagaaatgcaaaacaaaatatatagaaaagaaaaaactcacaagaatgttgagcttgccgttgaaagcagaagccacttttctaacaagctcttctctt 30702042  T
Q  244 tgagaagaagaagatgcatcacaaacagatccataaacagaaaaacctttctctttccactcattta 310  Q
    |||||||||||||   |||||||||| |||||||||||||||||||||||||| |||||||||||||    
T  30702043 tgagaagaagaagtcacatcacaaactgatccataaacagaaaaacctttctccttccactcattta 30702109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 85 - 126
Target Start/End: Complemental strand, 1502631 - 1502590
Alignment:
Q  85 acacaaacacatgtgattacattcaattacgtcattttctta 126  Q
    ||||| ||||||||||||||||||||||| ||||||||||||    
T  1502631 acacagacacatgtgattacattcaattatgtcattttctta 1502590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 85 - 128
Target Start/End: Original strand, 4946206 - 4946249
Alignment:
Q  85 acacaaacacatgtgattacattcaattacgtcattttcttaaa 128  Q
    ||||| |||||||||||||||||||||||  |||||||||||||    
T  4946206 acacagacacatgtgattacattcaattatatcattttcttaaa 4946249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 93 - 130
Target Start/End: Original strand, 30367629 - 30367666
Alignment:
Q  93 acatgtgattacattcaattacgtcattttcttaaatt 130  Q
    |||| |||||||||||||||| ||||||||||||||||    
T  30367629 acatttgattacattcaattatgtcattttcttaaatt 30367666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 90 - 130
Target Start/End: Original strand, 19730216 - 19730256
Alignment:
Q  90 aacacatgtgattacattcaattacgtcattttcttaaatt 130  Q
    |||||||||||| ||||||||||| |||||||||| |||||    
T  19730216 aacacatgtgatcacattcaattatgtcattttctcaaatt 19730256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 90 - 130
Target Start/End: Original strand, 19750806 - 19750846
Alignment:
Q  90 aacacatgtgattacattcaattacgtcattttcttaaatt 130  Q
    |||||||||||| ||||||||||| |||||||||| |||||    
T  19750806 aacacatgtgatcacattcaattatgtcattttctcaaatt 19750846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 84 - 130
Target Start/End: Original strand, 10893870 - 10893916
Alignment:
Q  84 gacacaaacacatgtgattacattcaattacgtcattttcttaaatt 130  Q
    ||||| |||||||||||||||||||||||| ||||||||||||||||    
T  10893870 gacaccaacacatgtgattacattcaattatgtcattttcttaaatt 10893916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 93 - 130
Target Start/End: Complemental strand, 18750925 - 18750888
Alignment:
Q  93 acatgtgattacattcaattacgtcattttcttaaatt 130  Q
    ||||||||||||||||||||| ||||||||||||||||    
T  18750925 acatgtgattacattcaattatgtcattttcttaaatt 18750888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 85 - 130
Target Start/End: Original strand, 44172892 - 44172937
Alignment:
Q  85 acacaaacacatgtgattacattcaattacgtcattttcttaaatt 130  Q
    ||||||||||||||||||||||| ||||| |||||||||| |||||    
T  44172892 acacaaacacatgtgattacattgaattatgtcattttctcaaatt 44172937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 84 - 124
Target Start/End: Complemental strand, 30013253 - 30013213
Alignment:
Q  84 gacacaaacacatgtgattacattcaattacgtcattttct 124  Q
    |||||||||||||||||||| ||| ||||||||||||||||    
T  30013253 gacacaaacacatgtgattatattgaattacgtcattttct 30013213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 91 - 130
Target Start/End: Complemental strand, 650570 - 650531
Alignment:
Q  91 acacatgtgattacattcaattacgtcattttcttaaatt 130  Q
    |||||||||||| |||||||||| ||||||||||||||||    
T  650570 acacatgtgattgcattcaattatgtcattttcttaaatt 650531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 91 - 130
Target Start/End: Complemental strand, 43160535 - 43160496
Alignment:
Q  91 acacatgtgattacattcaattacgtcattttcttaaatt 130  Q
    ||||||||||||||||||||||| || |||||||||||||    
T  43160535 acacatgtgattacattcaattatgttattttcttaaatt 43160496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 85 - 130
Target Start/End: Complemental strand, 21238874 - 21238829
Alignment:
Q  85 acacaaacacatgtgattacattcaattacgtcattttcttaaatt 130  Q
    |||| |||||||||||||||||||||||  | ||||||||||||||    
T  21238874 acactaacacatgtgattacattcaattttgacattttcttaaatt 21238829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 90 - 130
Target Start/End: Original strand, 10893354 - 10893394
Alignment:
Q  90 aacacatgtgattacattcaattacgtcattttcttaaatt 130  Q
    |||||||| ||||||||||||||| |||||||||| |||||    
T  10893354 aacacatgcgattacattcaattatgtcattttctcaaatt 10893394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 90 - 130
Target Start/End: Complemental strand, 32855406 - 32855366
Alignment:
Q  90 aacacatgtgattacattcaattacgtcattttcttaaatt 130  Q
    ||||||| ||||||||||||||||  |||||||||||||||    
T  32855406 aacacatatgattacattcaattaaatcattttcttaaatt 32855366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 36; Significance: 0.00000000003; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 91 - 130
Target Start/End: Complemental strand, 32691794 - 32691755
Alignment:
Q  91 acacatgtgattacattcaattacgtcattttcttaaatt 130  Q
    ||||||||||||||||||||||| ||||||||||||||||    
T  32691794 acacatgtgattacattcaattatgtcattttcttaaatt 32691755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 91 - 130
Target Start/End: Original strand, 31681838 - 31681877
Alignment:
Q  91 acacatgtgattacattcaattacgtcattttcttaaatt 130  Q
    |||||||||||| |||||||||| ||||||||||||||||    
T  31681838 acacatgtgatttcattcaattatgtcattttcttaaatt 31681877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 91 - 129
Target Start/End: Original strand, 8917544 - 8917582
Alignment:
Q  91 acacatgtgattacattcaattacgtcattttcttaaat 129  Q
    |||||| |||||||||||||||| |||||||||||||||    
T  8917544 acacatctgattacattcaattatgtcattttcttaaat 8917582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 94 - 130
Target Start/End: Complemental strand, 645380 - 645344
Alignment:
Q  94 catgtgattacattcaattacgtcattttcttaaatt 130  Q
    |||||||||||||||||||| ||||||||||||||||    
T  645380 catgtgattacattcaattatgtcattttcttaaatt 645344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 85 - 130
Target Start/End: Complemental strand, 28322298 - 28322253
Alignment:
Q  85 acacaaacacatgtgattacattcaattacgtcattttcttaaatt 130  Q
    |||| ||||||||||||||||||||||||  ||||||||| |||||    
T  28322298 acaccaacacatgtgattacattcaattaattcattttctcaaatt 28322253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 90 - 130
Target Start/End: Complemental strand, 10358155 - 10358115
Alignment:
Q  90 aacacatgtgattacattcaattacgtcattttcttaaatt 130  Q
    ||||||| |||||||||||| ||| ||||||||||||||||    
T  10358155 aacacatttgattacattcagttatgtcattttcttaaatt 10358115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 91 - 131
Target Start/End: Complemental strand, 683103 - 683063
Alignment:
Q  91 acacatgtgattacattcaattacgtcattttcttaaattc 131  Q
    ||||||||||||||||||||||| |||||||||| ||||||    
T  683103 acacatgtgattacattcaattatgtcattttctcaaattc 683063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 91 - 130
Target Start/End: Original strand, 45615423 - 45615462
Alignment:
Q  91 acacatgtgattacattcaattacgtcattttcttaaatt 130  Q
    |||||||||||||| |||||||| ||||||||||||||||    
T  45615423 acacatgtgattacgttcaattatgtcattttcttaaatt 45615462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 91 - 129
Target Start/End: Original strand, 9988707 - 9988745
Alignment:
Q  91 acacatgtgattacattcaattacgtcattttcttaaat 129  Q
    ||||||||||||||||||||||| |||||||||| ||||    
T  9988707 acacatgtgattacattcaattatgtcattttctcaaat 9988745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 84 - 130
Target Start/End: Complemental strand, 41989622 - 41989576
Alignment:
Q  84 gacacaaacacatgtgattacattcaattacgtcattttcttaaatt 130  Q
    ||||||||||||  | |||||||||||||| ||||||||||||||||    
T  41989622 gacacaaacacagttaattacattcaattatgtcattttcttaaatt 41989576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 84 - 113
Target Start/End: Complemental strand, 51939170 - 51939141
Alignment:
Q  84 gacacaaacacatgtgattacattcaatta 113  Q
    ||||||||||||||||||||||||||||||    
T  51939170 gacacaaacacatgtgattacattcaatta 51939141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 94 - 130
Target Start/End: Complemental strand, 8457973 - 8457937
Alignment:
Q  94 catgtgattacattcaattacgtcattttcttaaatt 130  Q
    |||||||||||||||||||| |||||||||| |||||    
T  8457973 catgtgattacattcaattatgtcattttctcaaatt 8457937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 95 - 127
Target Start/End: Original strand, 29388378 - 29388410
Alignment:
Q  95 atgtgattacattcaattacgtcattttcttaa 127  Q
    ||||||||||||||||||| |||||||||||||    
T  29388378 atgtgattacattcaattatgtcattttcttaa 29388410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 97 - 129
Target Start/End: Original strand, 50216696 - 50216728
Alignment:
Q  97 gtgattacattcaattacgtcattttcttaaat 129  Q
    ||||||||||||||||| |||||||||||||||    
T  50216696 gtgattacattcaattatgtcattttcttaaat 50216728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 32; Significance: 0.000000007; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 85 - 128
Target Start/End: Complemental strand, 32125218 - 32125175
Alignment:
Q  85 acacaaacacatgtgattacattcaattacgtcattttcttaaa 128  Q
    ||||| ||||||||||||||||||||||| || |||||||||||    
T  32125218 acacatacacatgtgattacattcaattaagtgattttcttaaa 32125175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 85 - 130
Target Start/End: Original strand, 6284663 - 6284708
Alignment:
Q  85 acacaaacacatgtgattacattcaattacgtcattttcttaaatt 130  Q
    |||| |||||||||||||| ||||||||| |||||||||| |||||    
T  6284663 acactaacacatgtgattaaattcaattatgtcattttctcaaatt 6284708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 94 - 130
Target Start/End: Complemental strand, 32125456 - 32125420
Alignment:
Q  94 catgtgattacattcaattacgtcattttcttaaatt 130  Q
    ||||||||||||||| |||| ||||||||||||||||    
T  32125456 catgtgattacattccattaggtcattttcttaaatt 32125420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 91 - 130
Target Start/End: Original strand, 26462653 - 26462692
Alignment:
Q  91 acacatgtgattacattcaattacgtcattttcttaaatt 130  Q
    |||||||||||||||||||||||  |||||||||||||||    
T  26462653 acacatgtgattacattcaattatttcattttcttaaatt 26462692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 92 - 130
Target Start/End: Original strand, 35198240 - 35198278
Alignment:
Q  92 cacatgtgattacattcaattacgtcattttcttaaatt 130  Q
    ||||||||||||||||||||||  |||||||||||||||    
T  35198240 cacatgtgattacattcaattaattcattttcttaaatt 35198278  T

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