View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4680_low_14 (Length: 297)
Name: NF4680_low_14
Description: NF4680
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4680_low_14 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 238; Significance: 1e-132; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 1 - 282
Target Start/End: Original strand, 6095863 - 6096144
Alignment:
| Q |
1 |
ttattttggcttgtttaaaaataaaaataaagtttcatagtattagtaaaactgcttcaaatttaccttgatgaccttcaaatggattaattgaagtgga |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||| ||||| |||||||||| |
|
|
| T |
6095863 |
ttattttggcttgtttaaaaataaaaataaagtttcatagtattagtaaaactgtttcaaatttaccttgatgatcttcaaatagattacttgaagtgga |
6095962 |
T |
|
| Q |
101 |
tgctgtatggctgtgagctccgccatatgggcatggttcaatgccttctccttttatgtgatctaggtgtgctttaattcttgaagtaaatccactaaag |
200 |
Q |
| |
|
|||||||||||||||| |||| ||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| || |||||||||| |
|
|
| T |
6095963 |
tgctgtatggctgtgaactcctccataggggcatggttcaatgcctcctccttttatgtgatctaggtgtgctttaattcttgaagcaactccactaaag |
6096062 |
T |
|
| Q |
201 |
ctaccattacaaagtttgcacttccatctaccattttcttcttttataacttggtcccaatagtaatcacccatgtatattt |
282 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6096063 |
ctaccattacagagtttgcacttccatctaccattttcttcttttataacttggtcccaatagtaatcacccatgtatattt |
6096144 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University