View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4680_low_16 (Length: 286)

Name: NF4680_low_16
Description: NF4680
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4680_low_16
NF4680_low_16
[»] chr6 (5 HSPs)
chr6 (27-276)||(712991-713240)
chr6 (19-231)||(710512-710724)
chr6 (19-208)||(702266-702455)
chr6 (19-208)||(717568-717757)
chr6 (28-210)||(716850-717029)
[»] chr1 (1 HSPs)
chr1 (40-191)||(35313692-35313843)
[»] chr5 (2 HSPs)
chr5 (19-95)||(20357809-20357885)
chr5 (19-82)||(20353970-20354033)
[»] chr4 (3 HSPs)
chr4 (19-95)||(5278442-5278518)
chr4 (19-95)||(5286423-5286499)
chr4 (19-82)||(5282578-5282641)
[»] chr2 (1 HSPs)
chr2 (19-112)||(6235378-6235471)


Alignment Details
Target: chr6 (Bit Score: 234; Significance: 1e-129; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 27 - 276
Target Start/End: Original strand, 712991 - 713240
Alignment:
Q  27 tatggaaatgcagttgctattgctggacttagcagccaaaatccaggtgtaatcacaattgctaatgctgtatttggatctaatccaaaaatctcttcag 126  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  712991 tatggaaatgcagttgctattgctggacttagcagccaaaatcctggtgtaatcacaattgctaatgctgtatttggatctaatccaaaaatttcttcag 713090  T
Q  127 aagttctcaccaaagcttttcaagttgacaataatatagttgacaatcttcaaaaacaattctgggtggacaacaactagaattgcaggctgtgatatgt 226  Q
    |||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  713091 aagttctcaccaaagcttttcaagttgacaataatatagtggataatcttcaaaaacaattctgggtggacaacaactagaattgcaggctgtgatatgt 713190  T
Q  227 gcttgaatcactaaatttattgttaaatttgttctttattttaccctatg 276  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  713191 gcttgaatcactaaatttattgttaaatttgttctttattttaccctatg 713240  T

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Target: chr6; HSP #2
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 19 - 231
Target Start/End: Complemental strand, 710724 - 710512
Alignment:
Q  19 atgtgggatatggaaatgcagttgctattgctggacttagcagccaaaatccaggtgtaatcacaattgctaatgctgtatttggatctaatccaaaaat 118  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  710724 atgtgggatatggaaatgcagttgctattgctggacttagcagccaaaatcctggtgtaatcacaattgctaatgctgtatttggatctaatccaaaaat 710625  T
Q  119 ctcttcagaagttctcaccaaagcttttcaagttgacaataatatagttgacaatcttcaaaaacaattctgggtggacaacaactagaattgcaggctg 218  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||  |    
T  710624 ctcttcagaagttctcaccaaagcttttcaagttgacaataatatagtggacaatcttcaaaaacaattttgggtggacaacaactagaattgcaggtcg 710525  T
Q  219 tgatatgtgcttg 231  Q
    |||||||| ||||    
T  710524 tgatatgtacttg 710512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 19 - 208
Target Start/End: Complemental strand, 702455 - 702266
Alignment:
Q  19 atgtgggatatggaaatgcagttgctattgctggacttagcagccaaaatccaggtgtaatcacaattgctaatgctgtatttggatctaatccaaaaat 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  702455 atgtgggatatggaaatgcagttgctattgctggacttagcagccaaaatccaggtgtaatcacaattgctaatgctgtatttggatctaatccaaaaat 702356  T
Q  119 ctcttcagaagttctcaccaaagcttttcaagttgacaataatatagttgacaatcttcaaaaacaattctgggtggacaacaactagaa 208  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||    
T  702355 ctcttcagaagttctcaccaaagcttttcaagttgacaataatatagtggacaatcttcaaaaacaattctgggtggacaactactagaa 702266  T

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Target: chr6; HSP #4
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 19 - 208
Target Start/End: Complemental strand, 717757 - 717568
Alignment:
Q  19 atgtgggatatggaaatgcagttgctattgctggacttagcagccaaaatccaggtgtaatcacaattgctaatgctgtatttggatctaatccaaaaat 118  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  717757 atgtgggatatggaaatgcagttgctattgctggacttagcagccaaaatcctggtgtaatcacaattgctaatgctgtatttggatctaatccaaaaat 717658  T
Q  119 ctcttcagaagttctcaccaaagcttttcaagttgacaataatatagttgacaatcttcaaaaacaattctgggtggacaacaactagaa 208  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  717657 ctcttcagaagttctcaccaaagcttttcaagttgacaataatatagtggacaatcttcaaaaacaattctgggtggacaacaactagaa 717568  T

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Target: chr6; HSP #5
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 28 - 210
Target Start/End: Original strand, 716850 - 717029
Alignment:
Q  28 atggaaatgcagttgctattgctggacttagcagccaaaatccaggtgtaatcacaattgctaatgctgtatttggatctaatccaaaaatctcttcaga 127  Q
    |||||||||| ||||  ||| ||||||||| |||||| ||| || | || ||||| |||  ||| |  |||||||| |||||||   |||| ||||||||    
T  716850 atggaaatgcggttgtcatttctggacttaacagccataattcaagagttatcactattattaaggaggtatttgggtctaatc---aaatttcttcaga 716946  T
Q  128 agttctcaccaaagcttttcaagttgacaataatatagttgacaatcttcaaaaacaattctgggtggacaacaactagaatt 210  Q
    | |||||||||| ||| ||||||| |||||||| ||||||||||||||||| |||||||||||| |||||||||| |||||||    
T  716947 acttctcaccaaggctcttcaagtggacaataacatagttgacaatcttcagaaacaattctggttggacaacaattagaatt 717029  T

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Target: chr1 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 40 - 191
Target Start/End: Original strand, 35313692 - 35313843
Alignment:
Q  40 ttgctattgctggacttagcagccaaaatccaggtgtaatcacaattgctaatgctgtatttggatctaatccaaaaatctcttcagaagttctcaccaa 139  Q
    |||| |||||||| ||||| |||||||| || || || || || ||||| |||||||| ||||||||||| |||  ||| ||||  ||||||||||||||    
T  35313692 ttgccattgctggtcttagtagccaaaaccctggagtgattaccattgcaaatgctgtgtttggatctaaaccaccaatttctttggaagttctcaccaa 35313791  T
Q  140 agcttttcaagttgacaataatatagttgacaatcttcaaaaacaattctgg 191  Q
    ||| |||||||| || || ||| || | ||| |||||||||| |||||||||    
T  35313792 agcctttcaagtggataaaaatgtaatcgactatcttcaaaagcaattctgg 35313843  T

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Target: chr5 (Bit Score: 45; Significance: 1e-16; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 19 - 95
Target Start/End: Complemental strand, 20357885 - 20357809
Alignment:
Q  19 atgtgggatatggaaatgcagttgctattgctggacttagcagccaaaatccaggtgtaatcacaattgctaatgct 95  Q
    ||||||||||||| ||||| ||||||||||||||||||||||| ||||||||||| || |||||  |||| ||||||    
T  20357885 atgtgggatatggcaatgccgttgctattgctggacttagcagtcaaaatccaggagttatcaccgttgcaaatgct 20357809  T

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Target: chr5; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 19 - 82
Target Start/End: Original strand, 20353970 - 20354033
Alignment:
Q  19 atgtgggatatggaaatgcagttgctattgctggacttagcagccaaaatccaggtgtaatcac 82  Q
    ||||||||||||| || || ||||||||||||||||||||||| ||||||||||| ||||||||    
T  20353970 atgtgggatatggcaacgctgttgctattgctggacttagcagtcaaaatccaggagtaatcac 20354033  T

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Target: chr4 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 19 - 95
Target Start/End: Complemental strand, 5278518 - 5278442
Alignment:
Q  19 atgtgggatatggaaatgcagttgctattgctggacttagcagccaaaatccaggtgtaatcacaattgctaatgct 95  Q
    ||||||||||||| || || ||||||||||||||||||||||| ||||||||||| || |||||  |||| ||||||    
T  5278518 atgtgggatatggcaacgctgttgctattgctggacttagcagtcaaaatccaggagttatcactgttgcaaatgct 5278442  T

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Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 19 - 95
Target Start/End: Complemental strand, 5286499 - 5286423
Alignment:
Q  19 atgtgggatatggaaatgcagttgctattgctggacttagcagccaaaatccaggtgtaatcacaattgctaatgct 95  Q
    ||||||||||||| || || ||||||||||||||||||||||| ||||||||||| || |||||  |||| ||||||    
T  5286499 atgtgggatatggcaacgccgttgctattgctggacttagcagtcaaaatccaggagttatcactgttgcaaatgct 5286423  T

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Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 19 - 82
Target Start/End: Original strand, 5282578 - 5282641
Alignment:
Q  19 atgtgggatatggaaatgcagttgctattgctggacttagcagccaaaatccaggtgtaatcac 82  Q
    ||||||||||||| || || ||||||||||||||||||||||| ||||| ||||| || |||||    
T  5282578 atgtgggatatggcaacgctgttgctattgctggacttagcagtcaaaacccaggagttatcac 5282641  T

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Target: chr2 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 19 - 112
Target Start/End: Complemental strand, 6235471 - 6235378
Alignment:
Q  19 atgtgggatatggaaatgcagttgctattgctggacttagcagccaaaatccaggtgtaatcacaattgctaatgctgtatttggatctaatcc 112  Q
    ||||||||||||| || || ||||||||||||||||||||||| ||||| ||||| || |||||  |||| |||||| | |||  |||||||||    
T  6235471 atgtgggatatggcaacgctgttgctattgctggacttagcagtcaaaacccaggagttatcaccgttgcaaatgctttgtttaaatctaatcc 6235378  T

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