View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4680_low_17 (Length: 256)

Name: NF4680_low_17
Description: NF4680
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4680_low_17
NF4680_low_17
[»] chr7 (4 HSPs)
chr7 (1-240)||(6095593-6095832)
chr7 (63-216)||(26915158-26915313)
chr7 (102-162)||(37257958-37258018)
chr7 (116-162)||(4883730-4883776)
[»] scaffold0807 (1 HSPs)
scaffold0807 (67-240)||(4871-5046)
[»] chr4 (4 HSPs)
chr4 (1-156)||(16585192-16585348)
chr4 (102-153)||(24618304-24618354)
chr4 (116-153)||(45050298-45050335)
chr4 (109-161)||(23235040-23235092)
[»] chr1 (1 HSPs)
chr1 (113-188)||(25586992-25587069)
[»] chr5 (3 HSPs)
chr5 (101-162)||(17174049-17174110)
chr5 (117-162)||(19337369-19337414)
chr5 (102-162)||(33335137-33335196)
[»] chr8 (1 HSPs)
chr8 (116-162)||(24452904-24452950)
[»] chr6 (3 HSPs)
chr6 (100-162)||(12664509-12664571)
chr6 (107-161)||(31341126-31341180)
chr6 (102-162)||(2893409-2893469)
[»] scaffold0053 (1 HSPs)
scaffold0053 (104-160)||(11635-11691)


Alignment Details
Target: chr7 (Bit Score: 204; Significance: 1e-111; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 1 - 240
Target Start/End: Complemental strand, 6095832 - 6095593
Alignment:
Q  1 caaggtgtgtcagagagattatccaaagatacaatcagtcacacaacaaaagcgtcaggcgtcaagcaaaagctaaattacaaacatcaaacaaagacgg 100  Q
    ||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  6095832 caaggtgtgtctgagagattatccaaagatacaatcagtcagacaacaaaagcgtcaagcgtcaagcaaaagctaaattacaaacatcaaacaaagacgg 6095733  T
Q  101 ggattaaacctccaaaattgataatcaaaatcaaaggtaacatattttgattttaaccaccattatttgaagcttaattctctcaagtaaagtttgcgtt 200  Q
    ||||||||||||||||| ||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  6095732 ggattaaacctccaaaactgataatcaaaatcaaaggtaacatgttttgatttcaaccaccattatttgaagcttaattctctcaagtaaagtttgcgtt 6095633  T
Q  201 gactccaccttttgctagaaaatttgaccatcacgttctt 240  Q
    || ||||||||||||| |||||||||||||| ||||||||    
T  6095632 gattccaccttttgctggaaaatttgaccattacgttctt 6095593  T

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Target: chr7; HSP #2
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 63 - 216
Target Start/End: Original strand, 26915158 - 26915313
Alignment:
Q  63 caagcaaaagctaaattacaaacatcaaacaaagacggggattaaacctccaaaattgataatcaaaatcaaaggtaacatattttgattttaaccacca 162  Q
    |||||||||||||||||||||| ||||||||| |||| ||||| ||||| ||||  |||||||||||||||||| || ||| ||||||||| ||||||||    
T  26915158 caagcaaaagctaaattacaaatatcaaacaatgacgaggattcaaccttcaaagctgataatcaaaatcaaagatagcatgttttgatttcaaccacca 26915257  T
Q  163 tt--atttgaagcttaattctctcaagtaaagtttgcgttgactccaccttttgct 216  Q
     |  ||||||||||||||||||||||||||| ||||  |||| |||||||||||||    
T  26915258 atacatttgaagcttaattctctcaagtaaaatttgtattgaatccaccttttgct 26915313  T

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Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 102 - 162
Target Start/End: Original strand, 37257958 - 37258018
Alignment:
Q  102 gattaaacctccaaaattgataatcaaaatcaaaggtaacatattttgattttaaccacca 162  Q
    ||||||||||| |||| || ||||||||||| || |||||||||||||| || ||||||||    
T  37257958 gattaaacctctaaaagtggtaatcaaaatcgaaagtaacatattttgaattcaaccacca 37258018  T

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Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 116 - 162
Target Start/End: Original strand, 4883730 - 4883776
Alignment:
Q  116 aattgataatcaaaatcaaaggtaacatattttgattttaaccacca 162  Q
    ||||||||||||||||| || ||| ||||||| ||||||||||||||    
T  4883730 aattgataatcaaaatcgaaagtagcatatttcgattttaaccacca 4883776  T

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Target: scaffold0807 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: scaffold0807
Description:

Target: scaffold0807; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 67 - 240
Target Start/End: Original strand, 4871 - 5046
Alignment:
Q  67 caaaagctaaattacaaacatcaaacaaagacggggattaaacctccaaaattgataatcaaaatcaaaggtaacatattttgattttaaccaccatta- 165  Q
    |||||||||||||||| ||||||||||| ||||  | || ||||||||||  ||||||||||||| ||| ||| |   ||||||||| |||||||| ||     
T  4871 caaaagctaaattacatacatcaaacaatgacgatgtttcaacctccaaacctgataatcaaaataaaaagtagcgagttttgatttcaaccaccaataa 4970  T
Q  166 -tttgaagcttaattctctcaagtaaagtttgcgttgactccaccttttgctagaaaatttgaccatcacgttctt 240  Q
     ||||||| || ||||| ||| |||||||||||||  | |||||||||||||  |||||| |||||| || |||||    
T  4971 gtttgaagtttgattctttcatgtaaagtttgcgtacaatccaccttttgctctaaaattcgaccattacattctt 5046  T

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Target: chr4 (Bit Score: 49; Significance: 4e-19; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 1 - 156
Target Start/End: Complemental strand, 16585348 - 16585192
Alignment:
Q  1 caaggtgtgtcagagagattatccaaagatacaatcagtcacacaacaaaa-gcgtcaggcgtcaagcaaaagctaaattacaaacatcaaacaaagacg 99  Q
    |||||||||| || || |||| ||||||||||||||||||| ||||||||| ||| ||  |  |||||||| | ||||||||| |   ||||||| || |    
T  16585348 caaggtgtgttagtgaaattacccaaagatacaatcagtcagacaacaaaaagcgccaaacaccaagcaaaggttaaattacataaggcaaacaatgatg 16585249  T
Q  100 gggattaaacctccaaaattgataatcaaaatcaaaggtaacatattttgattttaa 156  Q
     | ||| ||||||||||| ||||||||||||||||||||| | | ||||||||||||    
T  16585248 agaattcaacctccaaaactgataatcaaaatcaaaggtagcgtgttttgattttaa 16585192  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 102 - 153
Target Start/End: Original strand, 24618304 - 24618354
Alignment:
Q  102 gattaaacctccaaaattgataatcaaaatcaaaggtaacatattttgattt 153  Q
    |||||| ||||||||| ||||||||||||||||| |||||| ||||||||||    
T  24618304 gattaagcctccaaaactgataatcaaaatcaaa-gtaacaaattttgattt 24618354  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 116 - 153
Target Start/End: Original strand, 45050298 - 45050335
Alignment:
Q  116 aattgataatcaaaatcaaaggtaacatattttgattt 153  Q
    ||||||||||||||||| |||||||||||||| |||||    
T  45050298 aattgataatcaaaatcgaaggtaacatatttcgattt 45050335  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 109 - 161
Target Start/End: Original strand, 23235040 - 23235092
Alignment:
Q  109 cctccaaaattgataatcaaaatcaaaggtaacatattttgattttaaccacc 161  Q
    ||||||||  ||||||| |||||| || |||||||| ||||||||||||||||    
T  23235040 cctccaaacatgataataaaaatcgaaagtaacatactttgattttaaccacc 23235092  T

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Target: chr1 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 113 - 188
Target Start/End: Original strand, 25586992 - 25587069
Alignment:
Q  113 caaaattgataatcaaaatcaaaggtaacatattttgattttaaccacca--ttatttgaagcttaattctctcaagt 188  Q
    ||||| ||||||||||||||||| ||| ||| ||||||||| ||||||||   ||||||||| | |||||||||||||    
T  25586992 caaaactgataatcaaaatcaaaagtagcatgttttgatttcaaccaccaatatatttgaaggtaaattctctcaagt 25587069  T

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Target: chr5 (Bit Score: 34; Significance: 0.0000000004; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 101 - 162
Target Start/End: Complemental strand, 17174110 - 17174049
Alignment:
Q  101 ggattaaacctccaaaattgataatcaaaatcaaaggtaacatattttgattttaaccacca 162  Q
    ||||||| ||||||||||||||||||| |||| || |||| |||||| || |||||||||||    
T  17174110 ggattaagcctccaaaattgataatcataatcgaaagtaatatatttcgactttaaccacca 17174049  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 117 - 162
Target Start/End: Original strand, 19337369 - 19337414
Alignment:
Q  117 attgataatcaaaatcaaaggtaacatattttgattttaaccacca 162  Q
    |||||||||||||||||||  || ||||||||||||| ||||||||    
T  19337369 attgataatcaaaatcaaaaatagcatattttgatttcaaccacca 19337414  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 102 - 162
Target Start/End: Complemental strand, 33335196 - 33335137
Alignment:
Q  102 gattaaacctccaaaattgataatcaaaatcaaaggtaacatattttgattttaaccacca 162  Q
    |||||| ||||||| || |||| ||||||||||| | |||||||||||||||| |||||||    
T  33335196 gattaagcctccaagat-gatagtcaaaatcaaaagcaacatattttgatttttaccacca 33335137  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 116 - 162
Target Start/End: Original strand, 24452904 - 24452950
Alignment:
Q  116 aattgataatcaaaatcaaaggtaacatattttgattttaaccacca 162  Q
    ||||||||||||||||| || ||||||||||| ||||| ||||||||    
T  24452904 aattgataatcaaaatcgaaagtaacatatttcgatttcaaccacca 24452950  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000002; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 100 - 162
Target Start/End: Original strand, 12664509 - 12664571
Alignment:
Q  100 gggattaaacctccaaaattgataatcaaaatcaaaggtaacatattttgattttaaccacca 162  Q
    |||||||| || ||||||||| |||||| |||| || |||||||||||| | |||||||||||    
T  12664509 gggattaagccaccaaaattggtaatcataatcgaatgtaacatattttaaatttaaccacca 12664571  T

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Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 107 - 161
Target Start/End: Complemental strand, 31341180 - 31341126
Alignment:
Q  107 aacctccaaaattgataatcaaaatcaaaggtaacatattttgattttaaccacc 161  Q
    |||||||||||||| || |||||||| |||||||||||| | ||||| |||||||    
T  31341180 aacctccaaaattggtagtcaaaatcgaaggtaacatatgtcgatttcaaccacc 31341126  T

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Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 102 - 162
Target Start/End: Complemental strand, 2893469 - 2893409
Alignment:
Q  102 gattaaacctccaaaattgataatcaaaatcaaaggtaacatattttgattttaaccacca 162  Q
    |||||| ||| ||||  |||||||||||||| || ||||||||| | ||||||||||||||    
T  2893469 gattaagcctacaaagatgataatcaaaatcgaaagtaacatatctcgattttaaccacca 2893409  T

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Target: scaffold0053 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0053
Description:

Target: scaffold0053; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 104 - 160
Target Start/End: Original strand, 11635 - 11691
Alignment:
Q  104 ttaaacctccaaaattgataatcaaaatcaaaggtaacatattttgattttaaccac 160  Q
    ||||||||||| |||||||||||||| |||||    |||||||||||||| ||||||    
T  11635 ttaaacctccataattgataatcaaagtcaaacaggacatattttgatttcaaccac 11691  T

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