View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4680_low_18 (Length: 254)
Name: NF4680_low_18
Description: NF4680
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4680_low_18 |
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Alignment Details
Target: chr1 (Bit Score: 213; Significance: 1e-117; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 14 - 245
Target Start/End: Complemental strand, 25374566 - 25374337
Alignment:
| Q |
14 |
attttcacatacataagttgagtatgttacgtgatgaatgaaatgaaaaataggcactaaagttatattgttttgttatttattcattgtgcgactcttg |
113 |
Q |
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| T |
25374566 |
attttcacatacataagttgagtatgttacgtgatgaatgaaatgaaaaataggcaccaaagttatattgttttgttatttattcattgtgggactcttg |
25374467 |
T |
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| Q |
114 |
cgataattagtaatccaaaaattgacttcaataacaactcttaatatttgctaaccaaattttattacagaaataatggcgtaccaaatttgctaacgtt |
213 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25374466 |
cgataattagtaatccaaaaattgacttcaataacaactcttaata--tgctaaccaaattttattacagaaataatggcgtaccaaatttgctaacgtt |
25374369 |
T |
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| Q |
214 |
tttgtatcttcaattttccctgttattcttct |
245 |
Q |
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|||||||||||||||||||||||||||||||| |
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| T |
25374368 |
tttgtatcttcaattttccctgttattcttct |
25374337 |
T |
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