View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4680_low_2 (Length: 495)
Name: NF4680_low_2
Description: NF4680
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4680_low_2 |
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Alignment Details
Target: chr7 (Bit Score: 446; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 446; E-Value: 0
Query Start/End: Original strand, 1 - 466
Target Start/End: Original strand, 2268328 - 2268793
Alignment:
| Q |
1 |
ctttccctggttatgtgcactcatcaatatcgtgtgtagttgcatatgtagtctttttgttgttatggttatgtttcagcaatctcttgttataagtgtc |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
2268328 |
ctttccctggttatgtgcactcatcaatatcgtgtgtagttgcatatgtagtctttttgttgttatggttatgtttcaacaatctcttgttataagtgtc |
2268427 |
T |
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| Q |
101 |
tttcatactaagatactaatccttgggttcattctatttaaggataacttagtctgttgccactttcgttattagttgatttatcagttaatttatgtct |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2268428 |
tttcatactaagatactaatccttgggttcattctatttaaggataacttagtctgttgccactttcgttattagttgatttatcagttaatttatgtct |
2268527 |
T |
|
| Q |
201 |
accacttgattttttcagacatgaaaaaactttgtatattagttaatcggtatgtagttgttttgttaggtggctacctatttctctcacatgtatataa |
300 |
Q |
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| T |
2268528 |
atcacttgattttttcagacatgaaaaaactttgtatattagttaatcggtatgtagttattttgttaggtggctacctatttctctcacatgtatataa |
2268627 |
T |
|
| Q |
301 |
ttaattggtttttgttgttgcccatatcagctcttatagattcttttctaaaatgagacaagattattacttgtctttgatacataagttgttatgtggt |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2268628 |
ttaattggtttttgttgttgcccatatcagctcttatagattcttttctaaaatgagacaagattattacttgtctttgatacataagttgttatgtggt |
2268727 |
T |
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| Q |
401 |
tttattagggcctatagtgtgctgggtattatggtctaaataggtaatatgagaaaaattctttgt |
466 |
Q |
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| T |
2268728 |
tttattagggcctatagtgtgctgggtattatggtctaaataggtaatctgagaagaattctttgt |
2268793 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 409 - 451
Target Start/End: Original strand, 2268809 - 2268851
Alignment:
| Q |
409 |
ggcctatagtgtgctgggtattatggtctaaataggtaatatg |
451 |
Q |
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| T |
2268809 |
ggcctatagtgtgctgggtattatggtctaaatgggtattatg |
2268851 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 397 - 431
Target Start/End: Original strand, 2268865 - 2268899
Alignment:
| Q |
397 |
tggttttattagggcctatagtgtgctgggtatta |
431 |
Q |
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| T |
2268865 |
tggttttatcagggcctatagtgtgctgggtatta |
2268899 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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