View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4680_low_21 (Length: 227)
Name: NF4680_low_21
Description: NF4680
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4680_low_21 |
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Alignment Details
Target: chr7 (Bit Score: 181; Significance: 6e-98; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 181; E-Value: 6e-98
Query Start/End: Original strand, 19 - 211
Target Start/End: Original strand, 44950235 - 44950426
Alignment:
| Q |
19 |
ctaggtcaccaacatatacttgattgatcttgtttagcacacccatagcaatttcctcaactaatgccaattctgttctgtacacaaacattaagaaaaa |
118 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44950235 |
ctaggtcaccaacatatacttgattgatcttgtttagcacatccatagcaatttcctcaactaatgccaattctgttctgtacacaaacattaagaaaaa |
44950334 |
T |
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| Q |
119 |
tacagcacatgtaaagatctcaaattttacaatatgttcaaaattttattaggttcacttcataattcgttgatcttgcagatggattcctat |
211 |
Q |
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| T |
44950335 |
tacagcacatgtaaagatctcaaattttacaatatgttcaaaa-tttattaggttcacttcataattcgttgatcttgcagatggattcctat |
44950426 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 96; Significance: 3e-47; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 19 - 150
Target Start/End: Original strand, 16464295 - 16464426
Alignment:
| Q |
19 |
ctaggtcaccaacatatacttgattgatcttgtttagcacacccatagcaatttcctcaactaatgccaattctgttctgtacacaaacattaagaaaaa |
118 |
Q |
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||||||| |||||||||||| ||||||||||||||| ||| ||| ||||||||||||||| ||||||||||||||||||||||||||||| |||||||| |
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| T |
16464295 |
ctaggtctccaacatatactccattgatcttgtttagtacatccacagcaatttcctcaaccaatgccaattctgttctgtacacaaacatcaagaaaaa |
16464394 |
T |
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| Q |
119 |
tacagcacatgtaaagatctcaaattttacaa |
150 |
Q |
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||||||||||||||||||||||||||| |||| |
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| T |
16464395 |
tacagcacatgtaaagatctcaaatttcacaa |
16464426 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 19 - 150
Target Start/End: Original strand, 16471317 - 16471448
Alignment:
| Q |
19 |
ctaggtcaccaacatatacttgattgatcttgtttagcacacccatagcaatttcctcaactaatgccaattctgttctgtacacaaacattaagaaaaa |
118 |
Q |
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||||||| |||||||||||| |||||||||||||| ||| ||| ||||||||||||||| ||||||||||||||||||||||||||||| ||| | || |
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| T |
16471317 |
ctaggtctccaacatatactccattgatcttgtttaatacatccacagcaatttcctcaaccaatgccaattctgttctgtacacaaacatcaagcataa |
16471416 |
T |
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| Q |
119 |
tacagcacatgtaaagatctcaaattttacaa |
150 |
Q |
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|||| |||||||||||||||||||||| |||| |
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| T |
16471417 |
tacaacacatgtaaagatctcaaatttcacaa |
16471448 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 19 - 119
Target Start/End: Original strand, 16493789 - 16493889
Alignment:
| Q |
19 |
ctaggtcaccaacatatacttgattgatcttgtttagcacacccatagcaatttcctcaactaatgccaattctgttctgtacacaaacattaagaaaaa |
118 |
Q |
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|
|||||||||||||||||||| |||||||||||||||| || ||||||| ||||||||||||||| ||| |||||| |||| | |||||||| | ||||| |
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| T |
16493789 |
ctaggtcaccaacatatactcgattgatcttgtttagaacgtccatagcgatttcctcaactaattccagttctgtcctgttctcaaacattgacaaaaa |
16493888 |
T |
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| Q |
119 |
t |
119 |
Q |
| |
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| |
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|
| T |
16493889 |
t |
16493889 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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