View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4680_low_3 (Length: 447)
Name: NF4680_low_3
Description: NF4680
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4680_low_3 |
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Alignment Details
Target: chr8 (Bit Score: 196; Significance: 1e-106; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 149 - 435
Target Start/End: Complemental strand, 32874213 - 32873939
Alignment:
| Q |
149 |
gtacaaaacttgaccctgtcttacaacccgtcccagtatgaatgtaatgcaaccggtttgaaccggtcaaaagaaaaacatggacaaaaaatatggaaca |
248 |
Q |
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| T |
32874213 |
gtacaaaacttgaccctgtcttacaactcgtcccagtatgaatgtaatgcaaccgatttgaaccggtcaaaagaaaaacatggacaaaaaatatggaaca |
32874114 |
T |
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| Q |
249 |
gaacatggacatagctgaaactaggaccgcgttcaagttaatctccgggttacatgttgtgtctcaatttaagttgggcacaaagagnnnnnnnnnaaac |
348 |
Q |
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| T |
32874113 |
gaacatggacatatctgaaactaggaccacgttcaagttaatctccgggttacatgttgtgtctcaatttaagttgggcacaaagag--tttttttaaac |
32874016 |
T |
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| Q |
349 |
tattttacttactctctcatactttgtctctcacacacaactttttcactttcagaaaactcgctttctattttaaacctcgaccta |
435 |
Q |
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| T |
32874015 |
tatttta----------catactttgtctctcacacacaactttttcactttcaaaaaactcgctttctgttttaaacctcgaccta |
32873939 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 20 - 139
Target Start/End: Complemental strand, 32874392 - 32874266
Alignment:
| Q |
20 |
tgttgtaggtagtagtgagagtatgttattttgaaatgacactttggtggatggtagtcttctttg-------ttctagatttagatgtattttaaagtg |
112 |
Q |
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| T |
32874392 |
tgttgtaggtagtagtgagagtatgttattttggaaggacactttggtggatggtagtcttctttgttctttgttctagatttatatgtattttaaagtg |
32874293 |
T |
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| Q |
113 |
catgttgatagtaatgatttcataatg |
139 |
Q |
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| T |
32874292 |
catgttgatagtaatgatttcataatg |
32874266 |
T |
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