View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4680_low_4 (Length: 439)
Name: NF4680_low_4
Description: NF4680
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4680_low_4 |
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Alignment Details
Target: chr2 (Bit Score: 307; Significance: 1e-173; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 307; E-Value: 1e-173
Query Start/End: Original strand, 23 - 429
Target Start/End: Original strand, 8245896 - 8246303
Alignment:
| Q |
23 |
tgtacaaagtgaataacgagcatacttccannnnnnnaccaacctctcttagtaaagttctataaaattgatcatcgttgttaagatttctttagtgttc |
122 |
Q |
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| T |
8245896 |
tgtacaaagtgaataacgagcatacttccattttctcaccaacctctcttaataaagttctacgaagttgatcatcgttgttaagatttctttagtgttc |
8245995 |
T |
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| Q |
123 |
tttaatcgctcacatggtatcaaatttggaatcatttgcatgtacttcaccataagtccatactt----attctccctgctcaaattgcgttatttttct |
218 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
8245996 |
tttaatcgctcacatggtatcaaatttggaatcatttgcatgtacttcaccataagtccatacttattgattctccctgctcaaattgcgttatttttct |
8246095 |
T |
|
| Q |
219 |
tcgctgttagcttttgccaacttcgtttatcnnnnnnnnagacttgtattctctacagtggttgcacaatgcaataattataatagtgaagaccattaaa |
318 |
Q |
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||| ||||||||||||||| ||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
8246096 |
tcgttgttagcttttgccagcttcgtttatcttttttttagacttgtattctctaca---gttgcacaatgcaataattataatagtgaagaccattaaa |
8246192 |
T |
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| Q |
319 |
tctagaaagagaaatttatttcactaaatctaatgatgtccacaactactacacactatatccgttgtaagggataaataaaccttttctcatttcttca |
418 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
8246193 |
tctagaaagagaaatttatttcactaaatctaatgatgtccacaactactacacactatatctgttgtaagggataaataaaccttttctcatttcttca |
8246292 |
T |
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| Q |
419 |
tctgccctttg |
429 |
Q |
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||||||||||| |
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| T |
8246293 |
tctgccctttg |
8246303 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 62 - 140
Target Start/End: Original strand, 8447442 - 8447520
Alignment:
| Q |
62 |
caacctctcttagtaaagttctataaaattgatcatcgttgttaagatttctttagtgttctttaatcgctcacatggt |
140 |
Q |
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| T |
8447442 |
caacctctcttaataaagttctataacattgatcattgttgttaagatttcttcaggattatttaattgctcacatggt |
8447520 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 71 - 176
Target Start/End: Original strand, 8234039 - 8234139
Alignment:
| Q |
71 |
ttagtaaagttctataaaattgatcatcgttgttaagatttctttagtgttctttaatcgctcacatggtatcaaatttggaatcatttgcatgtacttc |
170 |
Q |
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|||||||||||||||||| |||||||| | ||| ||||||| | |||||||| | ||||||||| ||||| ||||| |||||||||||| |||| |
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| T |
8234039 |
ttagtaaagttctataaagttgatcattg-----aagttttctttgatattctttaacctttcacatggtctcaaacttggattcatttgcatgtgcttc |
8234133 |
T |
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| Q |
171 |
accata |
176 |
Q |
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|||||| |
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| T |
8234134 |
accata |
8234139 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 85 - 177
Target Start/End: Original strand, 8237228 - 8237320
Alignment:
| Q |
85 |
taaaattgatcatcgttgttaagatttctttagtgttctttaatcgctcacatggtatcaaatttggaatcatttgcatgtacttcaccataa |
177 |
Q |
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||||||||||| | | | | |||||||||| ||| || ||||| | ||||| |||| ||||| ||||| |||| ||||||||||||||||||| |
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| T |
8237228 |
taaaattgatcgttggtttaaagatttcttcagttttgtttaaccactcacgtggtttcaaacttggattcatatgcatgtacttcaccataa |
8237320 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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