View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4680_low_5 (Length: 360)
Name: NF4680_low_5
Description: NF4680
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4680_low_5 |
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Alignment Details
Target: chr1 (Bit Score: 327; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 327; E-Value: 0
Query Start/End: Original strand, 19 - 349
Target Start/End: Original strand, 29785364 - 29785694
Alignment:
| Q |
19 |
ataacctcaaccaacccactctccacaacctctttcctaacaacattttctacaaccaagctgtgactgtccccaccccaaacaaacttcatcccatttg |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29785364 |
ataacctcaaccaacccactctccacaacctctttcctaacaacattttctacaaccaagctgtgactgtccccaccccaaacaaacttcatcccatttg |
29785463 |
T |
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| Q |
119 |
ctattaattcattcatttgggccacaatgtggtccatcaaacatgaaccctcttgaacaaagatgggccttctgtgggtcccactgcacatcttgaagta |
218 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
29785464 |
ctattaattcattcatttgggccacaatgtggtccatcaaacatgaaccctcttgaacaaagaagggccttctgtgggtcccactgcacatcttgaagta |
29785563 |
T |
|
| Q |
219 |
attctctgatccatcatagccaacaacttccaatagtgcagcattaacacaatcaaatacaagtttctgatttgacctcattttccttctcttggcctca |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29785564 |
attctctgatccatcatagccaacaacttccaatagtgcagcattaacacaatcaaatacaagtttctgatttgacctcattttccttctcttggcctca |
29785663 |
T |
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| Q |
319 |
ttaagaggctgagtactgtccttgttttcat |
349 |
Q |
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||||||||||||||||||||||||||||||| |
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| T |
29785664 |
ttaagaggctgagtactgtccttgttttcat |
29785694 |
T |
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