View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4680_low_6 (Length: 357)
Name: NF4680_low_6
Description: NF4680
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4680_low_6 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 332; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 332; E-Value: 0
Query Start/End: Original strand, 18 - 357
Target Start/End: Complemental strand, 16843528 - 16843189
Alignment:
| Q |
18 |
agaaaatctaagaccatttacaaaatgtcataggtttatgatattcataattttatctgctttgtccatagtgaccatttaacagcttctaagaacttat |
117 |
Q |
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| T |
16843528 |
agaaaatccaagaccatttacaaaatgtcataggtttatgatattcataattttatctgctttgtccatagtgaccatttaacagcttctaagaacttat |
16843429 |
T |
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| Q |
118 |
cgtttcgcttcagtgcattgataagattagtgtaggttgtctcgtcaagttctattccattttttctcatttccttgatcaattctacagcctcttcatc |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16843428 |
cgtttcgcttcagtgcattgataagattagtgtaggttgtctcgtcaagttctattccattttttctcatttccttgatcaattctacagcctcttcatc |
16843329 |
T |
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| Q |
218 |
cactccagcaatcccatatgccttaatcaatgtgttatagctgcaaaaatcaggtcggagtccacattcattcaactccgcgagcacatcagacacttct |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16843328 |
cactccagcaatcccatatgccttaatcaatgtgttatagctgcaaaaatcaggtcggagtccacattcattcaactccgcgagcacatcagacacttct |
16843229 |
T |
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| Q |
318 |
tcgatccaactttgttaactgtagatattgatcacggtgt |
357 |
Q |
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| T |
16843228 |
tcgatccaactttgttcactgtagatattgatcacggtgt |
16843189 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 255; Significance: 1e-142; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 18 - 352
Target Start/End: Complemental strand, 24210794 - 24210460
Alignment:
| Q |
18 |
agaaaatctaagaccatttacaaaatgtcataggtttatgatattcataattttatctgctttgtccatagtgaccatttaacagcttctaagaacttat |
117 |
Q |
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|||||||| |||||| ||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
24210794 |
agaaaatccaagaccgtttacaaaatgccataggtttatgatattcataattttatctgcttcatccatagtgaccatttaacagcttctaagaacttat |
24210695 |
T |
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| Q |
118 |
cgtttcgcttcagtgcattgataagattagtgtaggttgtctcgtcaagttctattccattttttctcatttccttgatcaattctacagcctcttcatc |
217 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||| |||| ||||||||||||||||||||||||||||||||||||| |||||||||||| | |
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| T |
24210694 |
cgtttcgcttcagtgcattgataagattggtgtaggttgtctggtcaggttctattccattttttctcatttccttgatcaattcaacagcctcttcaac |
24210595 |
T |
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| Q |
218 |
cactccagcaatcccatatgccttaatcaatgtgttatagctgcaaaaatcaggtcggagtccacattcattcaactccgcgagcacatcagacacttct |
317 |
Q |
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|| ||||||||| ||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| || |||||| |
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| T |
24210594 |
cattccagcaattccatatgccttaatcaacgtgttatagctgcacaaatcaggtcggagtccacattcattcaactccgcgagcacatcggagacttct |
24210495 |
T |
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| Q |
318 |
tcgatccaactttgttaactgtagatattgatcac |
352 |
Q |
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|||||||||| ||||| || |||||||||||||| |
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| T |
24210494 |
tcgatccaaccttgttcaccatagatattgatcac |
24210460 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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