View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4680_low_8 (Length: 330)
Name: NF4680_low_8
Description: NF4680
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4680_low_8 |
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Alignment Details
Target: chr2 (Bit Score: 200; Significance: 1e-109; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 74 - 277
Target Start/End: Original strand, 10231254 - 10231457
Alignment:
| Q |
74 |
ttacagtgaattttggaagtcggattttatagacatcaacaagctccatcatcaagtcgtacaagtttgaaaaggcgctgtccaacaccagtccagcaat |
173 |
Q |
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| T |
10231254 |
ttacagtgaattttggaagtcggattttatagacatcaacaagctccatcatcaagtcgtacaagtttgaaaaggcgctgtccaacaccagtccagcaat |
10231353 |
T |
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| Q |
174 |
agaagggtcttcagctccataaagaaggctatatcataccaaagcaaaataagaagtcaaattacacaggagaattttgcatacaggtggctcagcattg |
273 |
Q |
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| T |
10231354 |
agaagggtcttcagctccataaagaaggctatatcataccaaagcaaaataagaagtcaaattacacaggagaatcttgcatacaggtggctcagcattg |
10231453 |
T |
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| Q |
274 |
aggt |
277 |
Q |
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|||| |
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| T |
10231454 |
aggt |
10231457 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 67; Significance: 9e-30; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 79 - 221
Target Start/End: Original strand, 56247692 - 56247834
Alignment:
| Q |
79 |
gtgaattttggaagtcggattttatagacatcaacaagctccatcatcaagtcgtacaagtttgaaaaggcgctgtccaacaccagtccagcaatagaag |
178 |
Q |
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| T |
56247692 |
gtgaactttggaagccggattttataaacgtccacaagctccatcatgagattatataagttagaaaaggcgctatccaataccattccagcaatagaag |
56247791 |
T |
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| Q |
179 |
ggtcttcagctccataaagaaggctatatcataccaaagcaaa |
221 |
Q |
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| T |
56247792 |
ggtcttcggctccataaagaaggctaaatcccaccaaagcaaa |
56247834 |
T |
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