View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4680_low_9 (Length: 329)

Name: NF4680_low_9
Description: NF4680
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4680_low_9
NF4680_low_9
[»] chr2 (1 HSPs)
chr2 (13-311)||(34505096-34505394)


Alignment Details
Target: chr2 (Bit Score: 240; Significance: 1e-133; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 13 - 311
Target Start/End: Original strand, 34505096 - 34505394
Alignment:
Q  13 tgagaagaaatgcaacgacgacagctataacactaatctttccttctagtaacacacgtgtatgtccaagaaacacctatttgactcatttgaccttacg 112  Q
    |||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  34505096 tgagaacaaatgcaactacgacagctataacactaatctttccttctagtaacacacgtgtatgtccatgaaacacctatttgactcatttgaccttacg 34505195  T
Q  113 tgtcaagcaattacacgctgtctccaacggttttctatggtcctagacagaccacattaatctcaaaactcaat-gggtaccccacgtaacttatattac 211  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| || |||||||||||||||||||||||||    
T  34505196 tgtcaagcaattacacgctgtctccaacggttttctatggtcctagacagaccacattaatatcaaaactctatggggtaccccacgtaacttatattac 34505295  T
Q  212 ccacctgttaaattctctttagatttattatattaattaataaataaaaacatacaatctcgtttgatttattatattagtacatgtctatagttttgtc 311  Q
    |||||||||||||||||||||||||  || | ||| || ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  34505296 ccacctgttaaattctctttagattcctt-ttttattttataaataaaaacatacaatttcgtttgatttattatattagtacatgtctatagttttgtc 34505394  T

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