View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4681-Insertion-10 (Length: 212)
Name: NF4681-Insertion-10
Description: NF4681
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4681-Insertion-10 |
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Alignment Details
Target: chr5 (Bit Score: 122; Significance: 9e-63; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 122; E-Value: 9e-63
Query Start/End: Original strand, 7 - 136
Target Start/End: Original strand, 29846828 - 29846957
Alignment:
| Q |
7 |
atggagttgagtctaagagacggagttcgactctcacaacttcgcgaatcaatgttcaaactatgactgagaaagatattcatattcagtgtctggcatg |
106 |
Q |
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| T |
29846828 |
atggagttgagtctaagagacggagttcgactctcacaacttcgcgaatcaatgttcaaactatgactgagaacgatattcatattcagtgtctgacatg |
29846927 |
T |
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| Q |
107 |
cctcaaatcaaactacacatatattaattt |
136 |
Q |
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| T |
29846928 |
cctcaaatcaaactacacatatattaattt |
29846957 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 106; E-Value: 3e-53
Query Start/End: Original strand, 7 - 136
Target Start/End: Original strand, 29867022 - 29867151
Alignment:
| Q |
7 |
atggagttgagtctaagagacggagttcgactctcacaacttcgcgaatcaatgttcaaactatgactgagaaagatattcatattcagtgtctggcatg |
106 |
Q |
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|||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||| ||||||||| |
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| T |
29867022 |
atggagttgagtctaagaaacggagttcgaccctcacaacttcgcgaatcaatgttcaaactatgacggagaacgatattcatattcagtatctggcatg |
29867121 |
T |
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| Q |
107 |
cctcaaatcaaactacacatatattaattt |
136 |
Q |
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||||||||||||||||||||||||||||| |
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| T |
29867122 |
tctcaaatcaaactacacatatattaattt |
29867151 |
T |
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