View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4681-Insertion-12 (Length: 231)
Name: NF4681-Insertion-12
Description: NF4681
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4681-Insertion-12 |
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| [»] chr5 (3 HSPs) |
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| [»] scaffold1155 (1 HSPs) |
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| [»] scaffold0345 (1 HSPs) |
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| [»] scaffold0105 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 212; Significance: 1e-116; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 8 - 231
Target Start/End: Complemental strand, 29021996 - 29021773
Alignment:
| Q |
8 |
acttattccctagattctccaacctcaactctctcgacctaaggtgctactatggtgacctcgactcgcttctctttcaaatctctcgcttccctttgaa |
107 |
Q |
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| T |
29021996 |
acttattccctagattctccaacctcaactctctcgacctaaggtgctactatggtgacctcgactcgcttctctttcaaatctctcgcttccctttgaa |
29021897 |
T |
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| Q |
108 |
cctcacatctctcaatttctcccaccaagatatctttcccgcagatggtttgcgagctttcagtaaaaacattactactttgatctctctcacttgttac |
207 |
Q |
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|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||| |
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| T |
29021896 |
cctcacatctctcaatttctccgaccaagatatctttcccgcagatggtttgcgagctttcagcaaaaacattactactttgacctctctcacttgttac |
29021797 |
T |
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| Q |
208 |
caccttgaaaccctcaatagcact |
231 |
Q |
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|||||||||||||||||||||||| |
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| T |
29021796 |
caccttgaaaccctcaatagcact |
29021773 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 11 - 197
Target Start/End: Original strand, 28661054 - 28661240
Alignment:
| Q |
11 |
tattccctagattctccaacctcaactctctcgacctaaggtgctactatggtgacctcgactcgcttctctttcaaatctctcgcttccctttgaacct |
110 |
Q |
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| T |
28661054 |
tattccctagattctccaacctgaactctctcgacctaacatgttactacggtaaccttgactcacttctatttcaaatctctagcttcccgttgaacct |
28661153 |
T |
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| Q |
111 |
cacatctctcaatttctcccaccaagatatctttcccgcagatggtttgcgagctttcagtaaaaacattactactttgatctctct |
197 |
Q |
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| T |
28661154 |
cacatctctcaatttctgcaacaaaaatatctttcccgcacatggtttgggagctttcagccaaaacattacaactttgacctctct |
28661240 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 173 - 231
Target Start/End: Original strand, 28695545 - 28695603
Alignment:
| Q |
173 |
aaaacattactactttgatctctctcacttgttaccaccttgaaaccctcaatagcact |
231 |
Q |
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| T |
28695545 |
aaaacattacaactatgacctctctcacttgttcccaccttgcaactctccatagcact |
28695603 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1155 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold1155
Description:
Target: scaffold1155; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 86 - 163
Target Start/End: Original strand, 1821 - 1898
Alignment:
| Q |
86 |
aaatctctcgcttccctttgaacctcacatctctcaatttctcccaccaagatatctttcccgcagatggtttgcgag |
163 |
Q |
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| T |
1821 |
aaatctctcgtttcccattgaacctcacatcactcaatctctcctaccaacccataattcccgcagatgggttgcgag |
1898 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0345 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0345
Description:
Target: scaffold0345; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 86 - 163
Target Start/End: Complemental strand, 8395 - 8318
Alignment:
| Q |
86 |
aaatctctcgcttccctttgaacctcacatctctcaatttctcccaccaagatatctttcccgcagatggtttgcgag |
163 |
Q |
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| T |
8395 |
aaatctctcgtttcccattgaacctcacatcactcaatctctcctaccaacccataattcccgcagatgggttgcgag |
8318 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0105 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0105
Description:
Target: scaffold0105; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 86 - 163
Target Start/End: Original strand, 30584 - 30661
Alignment:
| Q |
86 |
aaatctctcgcttccctttgaacctcacatctctcaatttctcccaccaagatatctttcccgcagatggtttgcgag |
163 |
Q |
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| T |
30584 |
aaatctctcgtttcccattgaacctcacatcactcaatctctcctaccaacccataattcccgcagatgggttgcgag |
30661 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 143 - 205
Target Start/End: Original strand, 21833269 - 21833331
Alignment:
| Q |
143 |
ttcccgcagatggtttgcgagctttcagtaaaaacattactactttgatctctctcacttgtt |
205 |
Q |
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| T |
21833269 |
ttcccgcagatgggttgcgagtttttgcacaaaacattactactttgacctctctcacttgtt |
21833331 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 143 - 205
Target Start/End: Original strand, 19467423 - 19467485
Alignment:
| Q |
143 |
ttcccgcagatggtttgcgagctttcagtaaaaacattactactttgatctctctcacttgtt |
205 |
Q |
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|||||||| |||| ||||||| ||||| | |||| ||||| ||||||| |||||||||||||| |
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| T |
19467423 |
ttcccgcaaatgggttgcgagttttcactcaaaatattacaactttgacctctctcacttgtt |
19467485 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 19 - 135
Target Start/End: Complemental strand, 9581878 - 9581762
Alignment:
| Q |
19 |
agattctccaacctcaactctctcgacctaaggtgctactatggtgacctcgactcgcttctctttcaaatctctcgcttccctttgaacctcacatctc |
118 |
Q |
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|||||| ||||||||| ||| |||||||| | ||| ||| ||| ||||| || |||||| | |||| ||||| | ||||| ||||| |||||||| | |
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| T |
9581878 |
agattcaccaacctcacctccctcgacctcacgtggtacagaggtaacctcaacgagcttctgtatcaagtctcttgtttcccattgaaactcacatcgc |
9581779 |
T |
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| Q |
119 |
tcaatttctcccaccaa |
135 |
Q |
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||||| ||||||||||| |
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| T |
9581778 |
tcaatctctcccaccaa |
9581762 |
T |
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