View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4681-Insertion-4 (Length: 516)
Name: NF4681-Insertion-4
Description: NF4681
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4681-Insertion-4 |
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Alignment Details
Target: chr6 (Bit Score: 278; Significance: 1e-155; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 7 - 417
Target Start/End: Original strand, 980771 - 981183
Alignment:
| Q |
7 |
acttcagaggtacctacagttgggtaaaaaag--ctatacaaacttacaaccatgttttctgcatatttagttgaataggttctgtctttccttaaccaa |
104 |
Q |
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| T |
980771 |
acttcagaggtacctacaactgggtaaaaaaaatctatacaaacttacaaccatgttttctgcatatttagttgaataggttccgtctttcttcaaccaa |
980870 |
T |
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| Q |
105 |
gttgtcactataacctcagctcgacaaatgggtcttctcaaatctgtctcctatcacattatgttaaagcaaagaaaaagttatagtatggtaggtaacc |
204 |
Q |
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| T |
980871 |
gttgtcactataacctcagctcgacaaatgggtcttctcaattctgtctcctatcatattatgttaaagcaaagaaaaagttagagtatgataggtaacc |
980970 |
T |
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| Q |
205 |
tgaaactaaatttgcaaaaatacaaccaaaatatgattct-cacattagaacaaaccatttcgtacgccctcccttggttgctcttagtaccaccagtgt |
303 |
Q |
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| T |
980971 |
tgaaactaaatttgcaaaaatactaccaaaatatgattttacacattggaac-aaccatttcgtatgccctcctttggttgctcttagtaccatcagtgt |
981069 |
T |
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| Q |
304 |
ggttgatctgaagttttttacgtttcacaatannnnnnncacatatttcctatatttctcaaagaaaacaaattagtcacagcctattaaactttttaga |
403 |
Q |
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| T |
981070 |
ggttgatctgaagctttttacgtttcacaatatttttttcacttgtttcttatatttctcaaagaaaacaaattagtcatagcctattaaactttctaga |
981169 |
T |
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| Q |
404 |
aaatgcacaatata |
417 |
Q |
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| T |
981170 |
aaatgcacaatata |
981183 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 447 - 514
Target Start/End: Original strand, 981225 - 981292
Alignment:
| Q |
447 |
ttgtaatgcaataccttcattctatcactttggtagtgatcaataaattttgaccactggacattatc |
514 |
Q |
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| T |
981225 |
ttgtaatgtgataccttcattctatcactttggtagtgatcaataaaatttgaccactggacattatc |
981292 |
T |
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