View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4681-Insertion-6 (Length: 390)

Name: NF4681-Insertion-6
Description: NF4681
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4681-Insertion-6
NF4681-Insertion-6
[»] chr8 (5 HSPs)
chr8 (10-390)||(2273811-2274190)
chr8 (23-89)||(10248340-10248406)
chr8 (8-91)||(17656493-17656578)
chr8 (23-91)||(43312412-43312480)
chr8 (32-85)||(22325878-22325931)
[»] chr1 (5 HSPs)
chr1 (8-90)||(34775112-34775195)
chr1 (8-91)||(32882606-32882690)
chr1 (40-85)||(10785252-10785297)
chr1 (25-82)||(31290795-31290852)
chr1 (8-64)||(46768442-46768499)
[»] chr2 (13 HSPs)
chr2 (8-90)||(4974985-4975068)
chr2 (8-90)||(4992893-4992976)
chr2 (23-85)||(12343063-12343125)
chr2 (8-83)||(7696209-7696285)
chr2 (39-89)||(41113527-41113577)
chr2 (23-85)||(34230448-34230509)
chr2 (10-63)||(16952143-16952196)
chr2 (10-63)||(17022808-17022861)
chr2 (10-63)||(17060114-17060167)
chr2 (23-64)||(27879926-27879967)
chr2 (27-63)||(387442-387478)
chr2 (29-61)||(22884931-22884963)
chr2 (23-63)||(37770422-37770462)
[»] chr3 (6 HSPs)
chr3 (10-91)||(37123621-37123703)
chr3 (23-84)||(50518862-50518922)
chr3 (23-64)||(32010028-32010069)
chr3 (29-63)||(43012643-43012677)
chr3 (24-85)||(46358181-46358242)
chr3 (23-67)||(14194194-14194238)
[»] chr5 (9 HSPs)
chr5 (10-91)||(14302203-14302285)
chr5 (23-91)||(21398093-21398161)
chr5 (10-85)||(33109957-33110033)
chr5 (10-63)||(30097600-30097654)
chr5 (9-63)||(7195059-7195114)
chr5 (23-81)||(8297721-8297779)
chr5 (8-85)||(10174926-10175004)
chr5 (11-78)||(7682806-7682874)
chr5 (8-91)||(26045721-26045805)
[»] chr7 (6 HSPs)
chr7 (8-62)||(24324555-24324610)
chr7 (23-84)||(1321041-1321103)
chr7 (23-61)||(22567903-22567941)
chr7 (8-61)||(28534286-28534340)
chr7 (8-63)||(23983472-23983528)
chr7 (40-84)||(43235601-43235645)
[»] scaffold0050 (1 HSPs)
scaffold0050 (23-85)||(36953-37014)
[»] chr4 (5 HSPs)
chr4 (23-85)||(22810934-22810996)
chr4 (13-85)||(48098581-48098651)
chr4 (23-85)||(19311139-19311201)
chr4 (8-80)||(49747778-49747851)
chr4 (23-91)||(39420809-39420877)
[»] scaffold1384 (1 HSPs)
scaffold1384 (23-91)||(1429-1497)
[»] scaffold0063 (1 HSPs)
scaffold0063 (26-90)||(58369-58433)
[»] scaffold0200 (1 HSPs)
scaffold0200 (23-85)||(19624-19686)


Alignment Details
Target: chr8 (Bit Score: 304; Significance: 1e-171; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 10 - 390
Target Start/End: Original strand, 2273811 - 2274190
Alignment:
Q  10 gacaacactcaccaaatacacatcaccatctaaaacagactccttcacgaaaacgccaactgtaaaaacgatatcccacacccaccaaatgcaagaaatt 109  Q
    |||||||| |||||||||||| ||||||     ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  2273811 gacaacacccaccaaatacacgtcacca-----aacagactccttcacgaaaacgccaaccgtaaaaacgatatcccacacccaccaaatgcaagaaatt 2273905  T
Q  110 gaatgtatnnnnnnnn----ttgacctgaactccttgttggcataatgtgtaggcaagagcataagcaactttggtgagttttcctctgagtaataattg 205  Q
    ||||||||            ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  2273906 gaatgtataaaaaaaaaaaattgacctgaactccttgttggcacaatgtgtaggcaagagcataagcaactttggtgagttttcctctgagtaatacttg 2274005  T
Q  206 agttgttccttttggaatgctgttaataacagctgcaacagcaaggctactaccatctacaaccttaacattaagctttggatgcctactaacatataag 305  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2274006 agttgttccttttggaatgctgttaataacagctgcaacagcaaggctactaccatctacaaccttaacattaagctttggatgcctactaacatataag 2274105  T
Q  306 cctccatagatgttaagctcttcctcttgattcattagacctagactcaccacttttatgccctttttgtcagcatccagtattg 390  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2274106 cctccatagatgttaagctcttcctcttgattcattagacctagactcaccacttttatgccctttttgtcagcatccagtattg 2274190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 23 - 89
Target Start/End: Original strand, 10248340 - 10248406
Alignment:
Q  23 aaatacacatcaccatctaaaacagactccttcacgaaaacgccaactgtaaaaacgatatcccaca 89  Q
    |||||||| |||||| |||||||| ||||||||||||||||| | ||||||||||||| ||||||||    
T  10248340 aaatacacgtcaccacctaaaacaaactccttcacgaaaacgaccactgtaaaaacgacatcccaca 10248406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 8 - 91
Target Start/End: Original strand, 17656493 - 17656578
Alignment:
Q  8 aggacaacactcaccaaa-tacacatcaccatctaaaacagactccttcacg-aaaacgccaactgtaaaaacgatatcccacacc 91  Q
    |||||||||| ||||||| | ||| ||||||||||||||||||||||||| | |||||| | |||| ||||||||||||| |||||    
T  17656493 aggacaacacccaccaaaattcacgtcaccatctaaaacagactccttcaagaaaaacgaccactgcaaaaacgatatccaacacc 17656578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 23 - 91
Target Start/End: Original strand, 43312412 - 43312480
Alignment:
Q  23 aaatacacatcaccatctaaaacagactccttcacgaaaacgccaactgtaaaaacgatatcccacacc 91  Q
    |||||||  |||||| ||||| ||||||||| ||| |||||| | ||||||||||||||||||||||||    
T  43312412 aaatacatgtcaccacctaaatcagactcctacacaaaaacgaccactgtaaaaacgatatcccacacc 43312480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 32 - 85
Target Start/End: Original strand, 22325878 - 22325931
Alignment:
Q  32 tcaccatctaaaacagactccttcacgaaaacgccaactgtaaaaacgatatcc 85  Q
    ||||||| ||||||||||||||| || |||||| | | ||||||||||||||||    
T  22325878 tcaccatataaaacagactccttaacaaaaacgaccattgtaaaaacgatatcc 22325931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 52; Significance: 1e-20; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 8 - 90
Target Start/End: Complemental strand, 34775195 - 34775112
Alignment:
Q  8 aggacaacactcaccaaa-tacacatcaccatctaaaacagactccttcacgaaaacgccaactgtaaaaacgatatcccacac 90  Q
    |||||||||| ||||||| ||||| ||| || |||||||||||||||||||||||||| ||||||||||||||| |||||||||    
T  34775195 aggacaacacccaccaaaatacacgtcatcacctaaaacagactccttcacgaaaacgacaactgtaaaaacgaaatcccacac 34775112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 8 - 91
Target Start/End: Complemental strand, 32882690 - 32882606
Alignment:
Q  8 aggacaacactcaccaaa-tacacatcaccatctaaaacagactccttcacgaaaacgccaactgtaaaaacgatatcccacacc 91  Q
    |||||||||| ||||||| || ||||||||  ||||||| ||||||||||||||||||   |||||||| ||||||||| |||||    
T  32882690 aggacaacacccaccaaaatatacatcaccgcctaaaactgactccttcacgaaaacgagcactgtaaacacgatatccaacacc 32882606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 40 - 85
Target Start/End: Original strand, 10785252 - 10785297
Alignment:
Q  40 taaaacagactccttcacgaaaacgccaactgtaaaaacgatatcc 85  Q
    ||||||||||||||||||||||||| || ||| |||||||||||||    
T  10785252 taaaacagactccttcacgaaaacgacatctgaaaaaacgatatcc 10785297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 25 - 82
Target Start/End: Original strand, 31290795 - 31290852
Alignment:
Q  25 atacacatcaccatctaaaacagactccttcacgaaaacgccaactgtaaaaacgata 82  Q
    ||||||||||||| ||||| ||||||||||| |||||||| | |||||||||| ||||    
T  31290795 atacacatcaccacctaaatcagactccttcgcgaaaacgaccactgtaaaaatgata 31290852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 8 - 64
Target Start/End: Complemental strand, 46768499 - 46768442
Alignment:
Q  8 aggacaacactcaccaaa-tacacatcaccatctaaaacagactccttcacgaaaacg 64  Q
    |||||||||| ||||||| | ||| |||||| ||||||||||||||||||||||||||    
T  46768499 aggacaacacccaccaaaattcacgtcaccacctaaaacagactccttcacgaaaacg 46768442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 48; Significance: 2e-18; HSPs: 13)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 8 - 90
Target Start/End: Complemental strand, 4975068 - 4974985
Alignment:
Q  8 aggacaacactcaccaaat-acacatcaccatctaaaacagactccttcacgaaaacgccaactgtaaaaacgatatcccacac 90  Q
    |||| ||||| |||||||| ||||| ||||| |||||||||||| ||||||||||||| | |||||||||||||||||||||||    
T  4975068 aggataacacccaccaaattacacaccaccacctaaaacagacttcttcacgaaaacgaccactgtaaaaacgatatcccacac 4974985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 8 - 90
Target Start/End: Complemental strand, 4992976 - 4992893
Alignment:
Q  8 aggacaacactcaccaaat-acacatcaccatctaaaacagactccttcacgaaaacgccaactgtaaaaacgatatcccacac 90  Q
    |||| ||||| |||||||| ||||| ||||| |||||||||||| ||||||||||||| | |||||||||||||||||||||||    
T  4992976 aggataacacccaccaaattacacaccaccacctaaaacagacttcttcacgaaaacgaccactgtaaaaacgatatcccacac 4992893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 23 - 85
Target Start/End: Complemental strand, 12343125 - 12343063
Alignment:
Q  23 aaatacacatcaccatctaaaacagactccttcacgaaaacgccaactgtaaaaacgatatcc 85  Q
    |||||||| |||||| |||||||||||||||||||||||||| |  |||||||||||||||||    
T  12343125 aaatacacgtcaccacctaaaacagactccttcacgaaaacgacctctgtaaaaacgatatcc 12343063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 8 - 83
Target Start/End: Complemental strand, 7696285 - 7696209
Alignment:
Q  8 aggacaacactcaccaaa-tacacatcaccatctaaaacagactccttcacgaaaacgccaactgtaaaaacgatat 83  Q
    |||||||||| ||||||| |||||||||||| |||||| | ||||||||||||||||| | | |||||||| |||||    
T  7696285 aggacaacacccaccaaaatacacatcaccacctaaaataaactccttcacgaaaacgaccaatgtaaaaatgatat 7696209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 39 - 89
Target Start/End: Original strand, 41113527 - 41113577
Alignment:
Q  39 ctaaaacagactccttcacgaaaacgccaactgtaaaaacgatatcccaca 89  Q
    |||||||||||||||||||||||||| | | |||| |||||||||||||||    
T  41113527 ctaaaacagactccttcacgaaaacgactattgtacaaacgatatcccaca 41113577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 23 - 85
Target Start/End: Complemental strand, 34230509 - 34230448
Alignment:
Q  23 aaatacacatcaccatctaaaacagactccttcacgaaaacgccaactgtaaaaacgatatcc 85  Q
    |||||||| |||||||||||| ||||||| | |||||||||| | ||| ||||||||||||||    
T  34230509 aaatacacgtcaccatctaaa-cagactcttccacgaaaacgaccactataaaaacgatatcc 34230448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 10 - 63
Target Start/End: Original strand, 16952143 - 16952196
Alignment:
Q  10 gacaacactcaccaaatacacatcaccatctaaaacagactccttcacgaaaac 63  Q
    |||||||| ||| ||||| |||||||||  |||||||||| |||||||||||||    
T  16952143 gacaacacccacaaaataaacatcaccacttaaaacagacgccttcacgaaaac 16952196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 10 - 63
Target Start/End: Original strand, 17022808 - 17022861
Alignment:
Q  10 gacaacactcaccaaatacacatcaccatctaaaacagactccttcacgaaaac 63  Q
    |||||||| ||| ||||| |||||||||  |||||||||| |||||||||||||    
T  17022808 gacaacacccacaaaataaacatcaccacttaaaacagacgccttcacgaaaac 17022861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 10 - 63
Target Start/End: Original strand, 17060114 - 17060167
Alignment:
Q  10 gacaacactcaccaaatacacatcaccatctaaaacagactccttcacgaaaac 63  Q
    |||||||| ||| ||||| |||||||||  |||||||||| |||||||||||||    
T  17060114 gacaacacccacaaaataaacatcaccacttaaaacagacgccttcacgaaaac 17060167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 23 - 64
Target Start/End: Original strand, 27879926 - 27879967
Alignment:
Q  23 aaatacacatcaccatctaaaacagactccttcacgaaaacg 64  Q
    ||||| ||||||||| |||||||||||||||||| |||||||    
T  27879926 aaataaacatcaccacctaaaacagactccttcaggaaaacg 27879967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 27 - 63
Target Start/End: Complemental strand, 387478 - 387442
Alignment:
Q  27 acacatcaccatctaaaacagactccttcacgaaaac 63  Q
    ||||||||||| ||||||||||||||||||| |||||    
T  387478 acacatcaccacctaaaacagactccttcacaaaaac 387442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 29 - 61
Target Start/End: Original strand, 22884931 - 22884963
Alignment:
Q  29 acatcaccatctaaaacagactccttcacgaaa 61  Q
    ||||||||| |||||||||||||||||||||||    
T  22884931 acatcaccacctaaaacagactccttcacgaaa 22884963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 23 - 63
Target Start/End: Original strand, 37770422 - 37770462
Alignment:
Q  23 aaatacacatcaccatctaaaacagactccttcacgaaaac 63  Q
    |||| ||| |||||| |||||||||||||||||||||||||    
T  37770422 aaatccacgtcaccacctaaaacagactccttcacgaaaac 37770462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 47; Significance: 1e-17; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 10 - 91
Target Start/End: Complemental strand, 37123703 - 37123621
Alignment:
Q  10 gacaacactcaccaaa-tacacatcaccatctaaaacagactccttcacgaaaacgccaactgtaaaaacgatatcccacacc 91  Q
    |||||||| ||||||| ||||||||||||| ||||| ||||| ||||||||||||| | |||||||||||||||||| |||||    
T  37123703 gacaacacccaccaaaatacacatcaccatataaaatagacttcttcacgaaaacgaccactgtaaaaacgatatccaacacc 37123621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 23 - 84
Target Start/End: Original strand, 50518862 - 50518922
Alignment:
Q  23 aaatacacatcaccatctaaaacagactccttcacgaaaacgccaactgtaaaaacgatatc 84  Q
    |||||||| |||||||||||||||||||||||||||| | | || |||||||||||||||||    
T  50518862 aaatacacctcaccatctaaaacagactccttcacgataccacc-actgtaaaaacgatatc 50518922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 23 - 64
Target Start/End: Complemental strand, 32010069 - 32010028
Alignment:
Q  23 aaatacacatcaccatctaaaacagactccttcacgaaaacg 64  Q
    ||||| ||||||||| ||||||||||||||||||||||||||    
T  32010069 aaataaacatcaccacctaaaacagactccttcacgaaaacg 32010028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 29 - 63
Target Start/End: Complemental strand, 43012677 - 43012643
Alignment:
Q  29 acatcaccatctaaaacagactccttcacgaaaac 63  Q
    ||||||||||||||||||||||||||||| |||||    
T  43012677 acatcaccatctaaaacagactccttcacaaaaac 43012643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 24 - 85
Target Start/End: Original strand, 46358181 - 46358242
Alignment:
Q  24 aatacacatcaccatctaaaacagactccttcacgaaaacgccaactgtaaaaacgatatcc 85  Q
    |||| |||||| || |||||||||||||||||||||||||| ||  || |||||||| ||||    
T  46358181 aataaacatcatcacctaaaacagactccttcacgaaaacgacatatgaaaaaacgaaatcc 46358242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 23 - 67
Target Start/End: Complemental strand, 14194238 - 14194194
Alignment:
Q  23 aaatacacatcaccatctaaaacagactccttcacgaaaacgcca 67  Q
    |||||||| |||||| |||||||||||||| |||||||| |||||    
T  14194238 aaatacacgtcaccacctaaaacagactccatcacgaaatcgcca 14194194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 10 - 91
Target Start/End: Original strand, 14302203 - 14302285
Alignment:
Q  10 gacaacactcaccaaa-tacacatcaccatctaaaacagactccttcacgaaaacgccaactgtaaaaacgatatcccacacc 91  Q
    |||||||| ||||||| ||||| |||||| |||||||||| |||||| |||||||| | | |||||||||||||||| |||||    
T  14302203 gacaacacccaccaaaatacacgtcaccacctaaaacagattccttcgcgaaaacgaccaatgtaaaaacgatatccaacacc 14302285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 23 - 91
Target Start/End: Original strand, 21398093 - 21398161
Alignment:
Q  23 aaatacacatcaccatctaaaacagactccttcacgaaaacgccaactgtaaaaacgatatcccacacc 91  Q
    |||||||| |||||||||||||||||| |||||||||||||  |   ||||||||||||||||| ||||    
T  21398093 aaatacacgtcaccatctaaaacagacgccttcacgaaaacaacctttgtaaaaacgatatcccgcacc 21398161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 10 - 85
Target Start/End: Original strand, 33109957 - 33110033
Alignment:
Q  10 gacaacactcaccaaa-tacacatcaccatctaaaacagactccttcacgaaaacgccaactgtaaaaacgatatcc 85  Q
    |||||||| ||||||| ||||| ||| || |||||||| || |||||||||||||| | ||||||||||||||||||    
T  33109957 gacaacacccaccaaaatacacgtcatcacctaaaacaaaccccttcacgaaaacgaccactgtaaaaacgatatcc 33110033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 10 - 63
Target Start/End: Complemental strand, 30097654 - 30097600
Alignment:
Q  10 gacaacactcaccaaa-tacacatcaccatctaaaacagactccttcacgaaaac 63  Q
    |||||||| ||||||| ||||| |||||| |||||||||||||||||||||||||    
T  30097654 gacaacacccaccaaaatacacgtcaccacctaaaacagactccttcacgaaaac 30097600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 9 - 63
Target Start/End: Original strand, 7195059 - 7195114
Alignment:
Q  9 ggacaacactcaccaaa-tacacatcaccatctaaaacagactccttcacgaaaac 63  Q
    ||||||||| ||||||| ||||| |||||| ||||||||||||||||||| |||||    
T  7195059 ggacaacacccaccaaaatacacgtcaccacctaaaacagactccttcacaaaaac 7195114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 23 - 81
Target Start/End: Complemental strand, 8297779 - 8297721
Alignment:
Q  23 aaatacacatcaccatctaaaacagactccttcacgaaaacgccaactgtaaaaacgat 81  Q
    ||||||||||||||| |||||||| ||||||||| ||||| | | | ||||||||||||    
T  8297779 aaatacacatcaccacctaaaacacactccttcaagaaaaagaccaatgtaaaaacgat 8297721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 8 - 85
Target Start/End: Complemental strand, 10175004 - 10174926
Alignment:
Q  8 aggacaacactcaccaaa-tacacatcaccatctaaaacagactccttcacgaaaacgccaactgtaaaaacgatatcc 85  Q
    |||||||||| ||||||| ||||| | |||| |||||||||||||||||   |||||| | || |||||||||||||||    
T  10175004 aggacaacacccaccaaagtacacgtaaccacctaaaacagactccttctaaaaaacgaccacggtaaaaacgatatcc 10174926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 11 - 78
Target Start/End: Complemental strand, 7682874 - 7682806
Alignment:
Q  11 acaacactcaccaaa-tacacatcaccatctaaaacagactccttcacgaaaacgccaactgtaaaaac 78  Q
    ||||||| ||||||| |||||||||||| |||||| |||||| ||||| |||||| | || ||||||||    
T  7682874 acaacacccaccaaaatacacatcaccacctaaaatagactctttcacaaaaacgaccaccgtaaaaac 7682806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 8 - 91
Target Start/End: Original strand, 26045721 - 26045805
Alignment:
Q  8 aggacaacactcaccaaa-tacacatcaccatctaaaacagactccttcacgaaaacgccaactgtaaaaacgatatcccacacc 91  Q
    |||||||||| ||||||| | ||| |||||| |||||||||||| ||||| ||||| | | || |||||||||| |||| |||||    
T  26045721 aggacaacacccaccaaaattcacgtcaccacctaaaacagacttcttcatgaaaatgaccacggtaaaaacgaaatccaacacc 26045805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 36; Significance: 0.00000000004; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 8 - 62
Target Start/End: Original strand, 24324555 - 24324610
Alignment:
Q  8 aggacaacactcaccaaa-tacacatcaccatctaaaacagactccttcacgaaaa 62  Q
    |||||||||||||||||| ||||| ||||||  |||||||||||||||||||||||    
T  24324555 aggacaacactcaccaaaatacacgtcaccacttaaaacagactccttcacgaaaa 24324610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 23 - 84
Target Start/End: Complemental strand, 1321103 - 1321041
Alignment:
Q  23 aaatacacatcaccatctaaaacagactcc-ttcacgaaaacgccaactgtaaaaacgatatc 84  Q
    ||||||||||||||| ||||||||||| || ||||||||| |  | |||||||||||||||||    
T  1321103 aaatacacatcaccacctaaaacagacccctttcacgaaagcaaccactgtaaaaacgatatc 1321041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 23 - 61
Target Start/End: Original strand, 22567903 - 22567941
Alignment:
Q  23 aaatacacatcaccatctaaaacagactccttcacgaaa 61  Q
    ||||||||||||||| ||||||||||||| |||||||||    
T  22567903 aaatacacatcaccacctaaaacagactctttcacgaaa 22567941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 8 - 61
Target Start/End: Original strand, 28534286 - 28534340
Alignment:
Q  8 aggacaacactcaccaaa-tacacatcaccatctaaaacagactccttcacgaaa 61  Q
    |||||||||| ||||||| || ||||||||| ||||||||||||| |||||||||    
T  28534286 aggacaacacccaccaaaataaacatcaccacctaaaacagactctttcacgaaa 28534340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 8 - 63
Target Start/End: Complemental strand, 23983528 - 23983472
Alignment:
Q  8 aggacaacactcaccaaa-tacacatcaccatctaaaacagactccttcacgaaaac 63  Q
    |||||||||| ||||||| || ||| ||||| ||||||||||||| |||||||||||    
T  23983528 aggacaacacccaccaaaataaacaccaccacctaaaacagactcattcacgaaaac 23983472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 40 - 84
Target Start/End: Complemental strand, 43235645 - 43235601
Alignment:
Q  40 taaaacagactccttcacgaaaacgccaactgtaaaaacgatatc 84  Q
    |||||||||||| |||||||||||| | || ||||||||||||||    
T  43235645 taaaacagactcattcacgaaaacggccaccgtaaaaacgatatc 43235601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0050 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0050
Description:

Target: scaffold0050; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 23 - 85
Target Start/End: Complemental strand, 37014 - 36953
Alignment:
Q  23 aaatacacatcaccatctaaaacagactccttcacgaaaacgccaactgtaaaaacgatatcc 85  Q
    |||||||| |||||| ||||||||||||||||||||||| | || ||||||||||||| ||||    
T  37014 aaatacacgtcaccacctaaaacagactccttcacgaaaccacc-actgtaaaaacgacatcc 36953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 35; Significance: 0.0000000001; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 23 - 85
Target Start/End: Original strand, 22810934 - 22810996
Alignment:
Q  23 aaatacacatcaccatctaaaacagactccttcacgaaaacgccaactgtaaaaacgatatcc 85  Q
    |||||||| |||||  |||||||||||| |||||||||| || | ||||||||||||||||||    
T  22810934 aaatacacgtcacctcctaaaacagactgcttcacgaaaccgaccactgtaaaaacgatatcc 22810996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 13 - 85
Target Start/End: Complemental strand, 48098651 - 48098581
Alignment:
Q  13 aacactcaccaaatacacatcaccatctaaaacagactccttcacgaaaacgccaactgtaaaaacgatatcc 85  Q
    ||||| |||||||||||| |||||| ||||||||  ||| ||||| |||||| | ||||||||||||||||||    
T  48098651 aacacccaccaaatacacgtcaccacctaaaaca--ctctttcacaaaaacgaccactgtaaaaacgatatcc 48098581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 23 - 85
Target Start/End: Original strand, 19311139 - 19311201
Alignment:
Q  23 aaatacacatcaccatctaaaacagactccttcacgaaaacgccaactgtaaaaacgatatcc 85  Q
    |||||||| |||||| |  ||||||| |||||||||||||||   ||||||||||||||||||    
T  19311139 aaatacacgtcaccaccataaacagattccttcacgaaaacgagcactgtaaaaacgatatcc 19311201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 8 - 80
Target Start/End: Complemental strand, 49747851 - 49747778
Alignment:
Q  8 aggacaacactcaccaaa-tacacatcaccatctaaaacagactccttcacgaaaacgccaactgtaaaaacga 80  Q
    |||||||||| ||||||| | ||  |||||| ||||||||||||| |||||||||||| | | |||||||||||    
T  49747851 aggacaacacccaccaaaattcatgtcaccacctaaaacagactctttcacgaaaacgaccattgtaaaaacga 49747778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 23 - 91
Target Start/End: Original strand, 39420809 - 39420877
Alignment:
Q  23 aaatacacatcaccatctaaaacagactccttcacgaaaacgccaactgtaaaaacgatatcccacacc 91  Q
    |||||||| |||||||||||||| ||||||| ||||| |||  | || ||| ||||||||||| |||||    
T  39420809 aaatacacgtcaccatctaaaactgactcctacacgagaacaaccaccgtataaacgatatccaacacc 39420877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1384 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold1384
Description:

Target: scaffold1384; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 23 - 91
Target Start/End: Original strand, 1429 - 1497
Alignment:
Q  23 aaatacacatcaccatctaaaacagactccttcacgaaaacgccaactgtaaaaacgatatcccacacc 91  Q
    |||||||| |||||| ||||||| ||||||| ||||| |||  | |||||||||||||||||| |||||    
T  1429 aaatacacgtcaccacctaaaactgactcctacacgagaacaaccactgtaaaaacgatatccaacacc 1497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0063 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0063
Description:

Target: scaffold0063; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 26 - 90
Target Start/End: Complemental strand, 58433 - 58369
Alignment:
Q  26 tacacatcaccatctaaaacagactccttcacgaaaacgccaactgtaaaaacgatatcccacac 90  Q
    |||||||||||| | |||||||||||||||||||||||| | | |||||||  ||||||| ||||    
T  58433 tacacatcaccaccaaaaacagactccttcacgaaaacgaccattgtaaaactgatatccaacac 58369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0200 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0200
Description:

Target: scaffold0200; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 23 - 85
Target Start/End: Complemental strand, 19686 - 19624
Alignment:
Q  23 aaatacacatcaccatctaaaacagactccttcacgaaaacgccaactgtaaaaacgatatcc 85  Q
    ||||||||||||||| |||||||| |||||||| | |||||| |  || ||||||||||||||    
T  19686 aaatacacatcaccacctaaaacaaactccttctcaaaaacgacctctataaaaacgatatcc 19624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University