View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4681-Insertion-7 (Length: 358)
Name: NF4681-Insertion-7
Description: NF4681
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4681-Insertion-7 |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 347; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 347; E-Value: 0
Query Start/End: Original strand, 8 - 358
Target Start/End: Complemental strand, 42026516 - 42026166
Alignment:
| Q |
8 |
gtcctcttcaaccacaacattatccttggaccacctccctccttccgagcaactttgttatgtccactgcaccatctgtgacaccatccttgctgtatga |
107 |
Q |
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| T |
42026516 |
gtcctcttcaaccacaacattatccttggaccacctccctccttccgagcaactttgttatgtccactgcaccatctgtgacaccatccttgctgtatga |
42026417 |
T |
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| Q |
108 |
aacatcactattttttctcactttccaacactaccttagctagggtttttcttctccattttcttttatgcaaatataactgattctccttcatcttttt |
207 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42026416 |
aacatcactattttttctcactttccaacactaccttagctagggtttttcttctccattttcttttatgcaaatataactgattctccttcatcttttt |
42026317 |
T |
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| Q |
208 |
tcaggtgagtgttccttgcacaagcttgttcaagaccgtgactgtgagatgcggtcattgcactaatctgcttccagttaacatgcgtgcattacttctg |
307 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
42026316 |
tcaggtgagtgttccttgcacaagcttgttcaagaccgtgactgtgagatgcggtcattgcactaatctgcttccagtcaacatgcgtgcattacttctg |
42026217 |
T |
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| Q |
308 |
ccatcccctaatcagtttcatttgggacactctttcttctccccaactcat |
358 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42026216 |
ccatcccctaatcagtttcatttgggacactctttcttctccccaactcat |
42026166 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 203 - 297
Target Start/End: Original strand, 8885823 - 8885917
Alignment:
| Q |
203 |
ttttttcaggtgagtgttccttgcacaagcttgttcaagaccgtgactgtgagatgcggtcattgcactaatctgcttccagttaacatgcgtgc |
297 |
Q |
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|||| |||||||||||||||||||||||| ||||||||||| ||||| |||||||| ||||||||||| || || || |||||||||||||||| |
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| T |
8885823 |
ttttctcaggtgagtgttccttgcacaagtttgttcaagactgtgacagtgagatgtggtcattgcaccaaccttctctcagttaacatgcgtgc |
8885917 |
T |
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