View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4681-Insertion-8 (Length: 345)
Name: NF4681-Insertion-8
Description: NF4681
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4681-Insertion-8 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 322; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 322; E-Value: 0
Query Start/End: Original strand, 8 - 345
Target Start/End: Complemental strand, 3949444 - 3949107
Alignment:
| Q |
8 |
aaaacagcattttcagataataaagggctacattgaaaatcatataaatctacactcataaataaactcataaccaatcaaacacagacacgtcagcacc |
107 |
Q |
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| T |
3949444 |
aaaacagcattttcagatcataaatggctacattgaaaatcatataaatctacactcataaataaactcataaccaatcaaacacggacacatcagcacc |
3949345 |
T |
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| Q |
108 |
gggagaaaattacgaaaaatgataaaattaaatgtattcacacatgtccgtccatatcaaacaccggacacgccttctatcagaagtttcggtggtgcaa |
207 |
Q |
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| T |
3949344 |
gggagaaaattacgaaaaatgataaaattaaatgtattcacacatgtccgtccatatcaaacaccggacacgccttctatcagaagtttcggtggtgcaa |
3949245 |
T |
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| Q |
208 |
gtgttggctaaaaaacaaattaacacatactcacatagatatcattaagtgcgtatctcctccgaatattatacaaaactcccggttcattcaagtaagt |
307 |
Q |
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| T |
3949244 |
gtgttggctaaaaaacaaattaacacatactcacatagatatcattaagtgcgtatctcctccgaatattatacaaaactcccggttcattcaagtaagt |
3949145 |
T |
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| Q |
308 |
caacctcgtcatatcttcaaatccaccaagctcatctt |
345 |
Q |
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| T |
3949144 |
caacctcgtcatatcttcaaatccaccaagctcatctt |
3949107 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 261 - 334
Target Start/End: Complemental strand, 48492460 - 48492387
Alignment:
| Q |
261 |
tatctcctccgaatattatacaaaactcccggttcattcaagtaagtcaacctcgtcatatcttcaaatccacc |
334 |
Q |
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| T |
48492460 |
tatcttctccgaatattatacaaaacccctggttcattcaaataaatcaatctcgtcatatcttcaactccacc |
48492387 |
T |
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