View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4681-Insertion-9 (Length: 133)

Name: NF4681-Insertion-9
Description: NF4681
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4681-Insertion-9
NF4681-Insertion-9
[»] chr7 (14 HSPs)
chr7 (7-133)||(1550017-1550143)
chr7 (7-125)||(1089263-1089381)
chr7 (7-133)||(1604982-1605108)
chr7 (7-133)||(1106595-1106721)
chr7 (7-133)||(1597008-1597134)
chr7 (7-133)||(1540792-1540918)
chr7 (7-114)||(1564093-1564200)
chr7 (7-133)||(1556837-1556963)
chr7 (41-125)||(3853244-3853328)
chr7 (41-122)||(3954623-3954704)
chr7 (86-125)||(2338392-2338431)
chr7 (43-125)||(2330536-2330618)
chr7 (84-131)||(15664198-15664245)
chr7 (106-133)||(17849684-17849711)
[»] chr8 (4 HSPs)
chr8 (7-131)||(18738672-18738796)
chr8 (7-131)||(18743636-18743760)
chr8 (7-133)||(18748603-18748729)
chr8 (7-133)||(18722951-18723077)
[»] scaffold0491 (1 HSPs)
scaffold0491 (7-133)||(5444-5570)


Alignment Details
Target: chr7 (Bit Score: 123; Significance: 1e-63; HSPs: 14)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 123; E-Value: 1e-63
Query Start/End: Original strand, 7 - 133
Target Start/End: Original strand, 1550017 - 1550143
Alignment:
Q  7 acttgacataatttgatactttgtgtcgatggagattgaagtgatgccaatatatcctcagggtgctttccaactaatatttcaagtgccactacaccaa 106  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  1550017 acttgacataatttgatactttgtgtcgatggagattgaagtgatgccaatatatcctcagggtgctttccaactaatgtttcaagtgccactacaccaa 1550116  T
Q  107 aactatatacatcacacttctcattca 133  Q
    |||||||||||||||||||||||||||    
T  1550117 aactatatacatcacacttctcattca 1550143  T

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Target: chr7; HSP #2
Raw Score: 87; E-Value: 4e-42
Query Start/End: Original strand, 7 - 125
Target Start/End: Complemental strand, 1089381 - 1089263
Alignment:
Q  7 acttgacataatttgatactttgtgtcgatggagattgaagtgatgccaatatatcctcagggtgctttccaactaatatttcaagtgccactacaccaa 106  Q
    |||||||||||||||||||||||||||||||  |||||||| |||| ||||||||| ||||||||| ||||||||||  |||||||||||||||||||||    
T  1089381 acttgacataatttgatactttgtgtcgatgttgattgaagggatgacaatatatcttcagggtgccttccaactaaagtttcaagtgccactacaccaa 1089282  T
Q  107 aactatatacatcacactt 125  Q
    |||||||||||||||||||    
T  1089281 aactatatacatcacactt 1089263  T

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Target: chr7; HSP #3
Raw Score: 79; E-Value: 2e-37
Query Start/End: Original strand, 7 - 133
Target Start/End: Complemental strand, 1605108 - 1604982
Alignment:
Q  7 acttgacataatttgatactttgtgtcgatggagattgaagtgatgccaatatatcctcagggtgctttccaactaatatttcaagtgccactacaccaa 106  Q
    |||||||||| ||||| ||||||||||||    ||||||||||||| ||||||||||||||||||| ||||||||||   ||||||||||||||||||||    
T  1605108 acttgacatagtttgacactttgtgtcgaatttgattgaagtgatgacaatatatcctcagggtgccttccaactaaagcttcaagtgccactacaccaa 1605009  T
Q  107 aactatatacatcacacttctcattca 133  Q
    ||||||||||||||||||| |||||||    
T  1605008 aactatatacatcacacttttcattca 1604982  T

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Target: chr7; HSP #4
Raw Score: 75; E-Value: 6e-35
Query Start/End: Original strand, 7 - 133
Target Start/End: Complemental strand, 1106721 - 1106595
Alignment:
Q  7 acttgacataatttgatactttgtgtcgatggagattgaagtgatgccaatatatcctcagggtgctttccaactaatatttcaagtgccactacaccaa 106  Q
    |||||||||| ||||| |||||||| |||    ||||||||||||| ||||||||||||||||||| ||||||||||   ||||||||||||||||||||    
T  1106721 acttgacatagtttgacactttgtggcgaatttgattgaagtgatgacaatatatcctcagggtgccttccaactaaagcttcaagtgccactacaccaa 1106622  T
Q  107 aactatatacatcacacttctcattca 133  Q
    ||||||||||||||||||| |||||||    
T  1106621 aactatatacatcacacttttcattca 1106595  T

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Target: chr7; HSP #5
Raw Score: 71; E-Value: 1e-32
Query Start/End: Original strand, 7 - 133
Target Start/End: Complemental strand, 1597134 - 1597008
Alignment:
Q  7 acttgacataatttgatactttgtgtcgatggagattgaagtgatgccaatatatcctcagggtgctttccaactaatatttcaagtgccactacaccaa 106  Q
    |||||||||| ||||| ||||||||||||||  ||||||||||||| ||||| |||| |||||||| ||||||||||  ||||||||||||| || ||||    
T  1597134 acttgacatagtttgagactttgtgtcgatgatgattgaagtgatgacaataaatccccagggtgccttccaactaaagtttcaagtgccaccacgccaa 1597035  T
Q  107 aactatatacatcacacttctcattca 133  Q
    | ||||||||||||||||| |||||||    
T  1597034 agctatatacatcacacttttcattca 1597008  T

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Target: chr7; HSP #6
Raw Score: 67; E-Value: 4e-30
Query Start/End: Original strand, 7 - 133
Target Start/End: Original strand, 1540792 - 1540918
Alignment:
Q  7 acttgacataatttgatactttgtgtcgatggagattgaagtgatgccaatatatcctcagggtgctttccaactaatatttcaagtgccactacaccaa 106  Q
    ||||||| || ||||| ||||  ||||||||  ||||||||||||| ||||| |||| |||||||| ||||||||||  ||||||||| |||||||||||    
T  1540792 acttgacgtagtttgacacttcttgtcgatgttgattgaagtgatgacaataaatccccagggtgccttccaactaaagtttcaagtgtcactacaccaa 1540891  T
Q  107 aactatatacatcacacttctcattca 133  Q
    ||||||||||||||||||| |||||||    
T  1540892 aactatatacatcacacttttcattca 1540918  T

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Target: chr7; HSP #7
Raw Score: 64; E-Value: 2e-28
Query Start/End: Original strand, 7 - 114
Target Start/End: Original strand, 1564093 - 1564200
Alignment:
Q  7 acttgacataatttgatactttgtgtcgatggagattgaagtgatgccaatatatcctcagggtgctttccaactaatatttcaagtgccactacaccaa 106  Q
    |||||||||||||||||||||||||||||||  ||||||||||||| |||||||||  |||| | | ||||||||||  ||||||||| |||||||||||    
T  1564093 acttgacataatttgatactttgtgtcgatgttgattgaagtgatgacaatatatctccaggtttccttccaactaaagtttcaagtgtcactacaccaa 1564192  T
Q  107 aactatat 114  Q
    ||||||||    
T  1564193 aactatat 1564200  T

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Target: chr7; HSP #8
Raw Score: 51; E-Value: 1e-20
Query Start/End: Original strand, 7 - 133
Target Start/End: Original strand, 1556837 - 1556963
Alignment:
Q  7 acttgacataatttgatactttgtgtcgatggagattgaagtgatgccaatatatcctcagggtgctttccaactaatatttcaagtgccactacaccaa 106  Q
    |||||||||| ||||| |||| |||||||||  || |||||||||| || || |||  |||| ||| ||||||||||  |||||||||| || |||||||    
T  1556837 acttgacatagtttgacacttcgtgtcgatgttgactgaagtgatgacagtaaatctccaggatgccttccaactaaagtttcaagtgctacaacaccaa 1556936  T
Q  107 aactatatacatcacacttctcattca 133  Q
    |||||||| |||||||||| |||||||    
T  1556937 aactatatgcatcacacttttcattca 1556963  T

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Target: chr7; HSP #9
Raw Score: 45; E-Value: 5e-17
Query Start/End: Original strand, 41 - 125
Target Start/End: Complemental strand, 3853328 - 3853244
Alignment:
Q  41 attgaagtgatgccaatatatcctcagggtgctttccaactaatatttcaagtgccactacaccaaaactatatacatcacactt 125  Q
    |||||||||||| |||||| |||||||| ||  |||| | ||| ||||||||||||| ||| |||||||||||||||||||||||    
T  3853328 attgaagtgatgacaatatttcctcaggatgtcttcccaataaaatttcaagtgccattaccccaaaactatatacatcacactt 3853244  T

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Target: chr7; HSP #10
Raw Score: 42; E-Value: 0.000000000000003
Query Start/End: Original strand, 41 - 122
Target Start/End: Original strand, 3954623 - 3954704
Alignment:
Q  41 attgaagtgatgccaatatatcctcagggtgctttccaactaatatttcaagtgccactacaccaaaactatatacatcaca 122  Q
    |||||||||||| |||||| ||||| || |   |||| ||||| ||||||||||||||||| ||||||||||||||||||||    
T  3954623 attgaagtgatgacaatatttcctcgggatatcttcccactaaaatttcaagtgccactactccaaaactatatacatcaca 3954704  T

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Target: chr7; HSP #11
Raw Score: 32; E-Value: 0.000000003
Query Start/End: Original strand, 86 - 125
Target Start/End: Complemental strand, 2338431 - 2338392
Alignment:
Q  86 tttcaagtgccactacaccaaaactatatacatcacactt 125  Q
    |||||||||||||||| ||||||||||||||||| |||||    
T  2338431 tttcaagtgccactactccaaaactatatacatcgcactt 2338392  T

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Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000001
Query Start/End: Original strand, 43 - 125
Target Start/End: Complemental strand, 2330618 - 2330536
Alignment:
Q  43 tgaagtgatgccaatatatcctcagggtgctttccaactaatatttcaagtgccactacaccaaaactatatacatcacactt 125  Q
    |||||||||| || ||||||  |||||||  |||| | |||  ||||||||||||| || ||||||||||||||||| |||||    
T  2330618 tgaagtgatgacagtatatcaccagggtgtcttcccattaaagtttcaagtgccacaactccaaaactatatacatcgcactt 2330536  T

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Target: chr7; HSP #13
Raw Score: 28; E-Value: 0.0000007
Query Start/End: Original strand, 84 - 131
Target Start/End: Original strand, 15664198 - 15664245
Alignment:
Q  84 tatttcaagtgccactacaccaaaactatatacatcacacttctcatt 131  Q
    |||||| | ||||| ||| ||||||||||| |||||||||||||||||    
T  15664198 tatttccaatgccaataccccaaaactatacacatcacacttctcatt 15664245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 28; E-Value: 0.0000007
Query Start/End: Original strand, 106 - 133
Target Start/End: Complemental strand, 17849711 - 17849684
Alignment:
Q  106 aaactatatacatcacacttctcattca 133  Q
    ||||||||||||||||||||||||||||    
T  17849711 aaactatatacatcacacttctcattca 17849684  T

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Target: chr8 (Bit Score: 81; Significance: 2e-38; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 81; E-Value: 2e-38
Query Start/End: Original strand, 7 - 131
Target Start/End: Original strand, 18738672 - 18738796
Alignment:
Q  7 acttgacataatttgatactttgtgtcgatggagattgaagtgatgccaatatatcctcagggtgctttccaactaatatttcaagtgccactacaccaa 106  Q
    |||||||||| ||||| ||||||||||||||  ||||||||||||| ||||| |||| |||||||| ||||||||||  |||||||||||||||||||||    
T  18738672 acttgacatagtttgagactttgtgtcgatgttgattgaagtgatgacaataaatccccagggtgccttccaactaaagtttcaagtgccactacaccaa 18738771  T
Q  107 aactatatacatcacacttctcatt 131  Q
    ||||||||||||||||||| |||||    
T  18738772 aactatatacatcacacttttcatt 18738796  T

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Target: chr8; HSP #2
Raw Score: 81; E-Value: 2e-38
Query Start/End: Original strand, 7 - 131
Target Start/End: Original strand, 18743636 - 18743760
Alignment:
Q  7 acttgacataatttgatactttgtgtcgatggagattgaagtgatgccaatatatcctcagggtgctttccaactaatatttcaagtgccactacaccaa 106  Q
    |||||||||| ||||| ||||||||||||||  ||||||||||||| ||||| |||| |||||||| ||||||||||  |||||||||||||||||||||    
T  18743636 acttgacatagtttgagactttgtgtcgatgttgattgaagtgatgacaataaatccccagggtgccttccaactaaagtttcaagtgccactacaccaa 18743735  T
Q  107 aactatatacatcacacttctcatt 131  Q
    ||||||||||||||||||| |||||    
T  18743736 aactatatacatcacacttttcatt 18743760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 79; E-Value: 2e-37
Query Start/End: Original strand, 7 - 133
Target Start/End: Original strand, 18748603 - 18748729
Alignment:
Q  7 acttgacataatttgatactttgtgtcgatggagattgaagtgatgccaatatatcctcagggtgctttccaactaatatttcaagtgccactacaccaa 106  Q
    |||||||||| ||||| ||||||||||||||  ||||||||||||| ||||| |||| |||||||| ||||| ||||  |||||||||||||||||||||    
T  18748603 acttgacatagtttgacactttgtgtcgatgttgattgaagtgatgacaataaatccccagggtgccttccagctaaagtttcaagtgccactacaccaa 18748702  T
Q  107 aactatatacatcacacttctcattca 133  Q
    ||||||||||||||||||| |||||||    
T  18748703 aactatatacatcacacttttcattca 18748729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 71; E-Value: 1e-32
Query Start/End: Original strand, 7 - 133
Target Start/End: Original strand, 18722951 - 18723077
Alignment:
Q  7 acttgacataatttgatactttgtgtcgatggagattgaagtgatgccaatatatcctcagggtgctttccaactaatatttcaagtgccactacaccaa 106  Q
    |||||| ||| ||||| ||||||||| ||||  ||||||||||||| ||||| |||| |||||||| ||||| ||||  |||||||||||||||||||||    
T  18722951 acttgatatagtttgacactttgtgttgatgttgattgaagtgatgacaataaatccccagggtgccttccagctaaagtttcaagtgccactacaccaa 18723050  T
Q  107 aactatatacatcacacttctcattca 133  Q
    ||||||||||||||||||| |||||||    
T  18723051 aactatatacatcacacttttcattca 18723077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0491 (Bit Score: 79; Significance: 2e-37; HSPs: 1)
Name: scaffold0491
Description:

Target: scaffold0491; HSP #1
Raw Score: 79; E-Value: 2e-37
Query Start/End: Original strand, 7 - 133
Target Start/End: Original strand, 5444 - 5570
Alignment:
Q  7 acttgacataatttgatactttgtgtcgatggagattgaagtgatgccaatatatcctcagggtgctttccaactaatatttcaagtgccactacaccaa 106  Q
    |||||||||| ||||| ||||||||||||||  ||||||||||||| ||||| |||| |||||||| ||||| ||||  |||||||||||||||||||||    
T  5444 acttgacatagtttgacactttgtgtcgatgttgattgaagtgatgacaataaatccccagggtgccttccagctaaagtttcaagtgccactacaccaa 5543  T
Q  107 aactatatacatcacacttctcattca 133  Q
    ||||||||||||||||||| |||||||    
T  5544 aactatatacatcacacttttcattca 5570  T

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