View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4681_high_12 (Length: 465)
Name: NF4681_high_12
Description: NF4681
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4681_high_12 |
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Alignment Details
Target: chr1 (Bit Score: 377; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 377; E-Value: 0
Query Start/End: Original strand, 15 - 446
Target Start/End: Complemental strand, 47126565 - 47126122
Alignment:
| Q |
15 |
gacccaagtttgaagaacagaaatgggccagtgaaattgccatatacccttctgtttcccaatacctctgattattctagggagggtggactcactggta |
114 |
Q |
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| T |
47126565 |
gacccaagtttgaagaacagaaatgggccagtgaaattgccttatacccttctgtttcccaatacctctgattattctagggagggtggactcactggta |
47126466 |
T |
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| Q |
115 |
agggaattcccaacagcatatccatctgaaaccattctctttgaattcttgctatttatctaaccaaagacttagctttggtatcgaataaactatgtat |
214 |
Q |
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| T |
47126465 |
agggaattcccaacagcatatccatctgaaaccattctctttgaatttttgctatttatctaaccaaagacttagctttggtgtcgaataaactatgtat |
47126366 |
T |
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| Q |
215 |
caccgacactttagattgaag----gtttggtgtccgacacgatccaaacatatgtgggtacattcaattatttca---tcttaaattattattggtgtc |
307 |
Q |
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| T |
47126365 |
caccgacactttagattgaaggtgtgtttggtgttcgacacgatccaaacatatgtgggtacattcaattatttcattttcttaaattattattggtgtc |
47126266 |
T |
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| Q |
308 |
atcatgtaagtgtcgt-----gtgtctgtgtccgtgcttcatagtgaataaattatgtgtatgcctaccatattcttgtatttttatcttcttgttatgc |
402 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47126265 |
atcatgtaagtgtcgtgtcaagtgtctgtgtccgtgcttcatagtgaataaattatgtgtatgcctaccatattcttgtatttttatcttcttgttatgc |
47126166 |
T |
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| Q |
403 |
caagactagagtgtacgaatgaaatatgtaatatcattagtctt |
446 |
Q |
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| T |
47126165 |
caagactagagtgtacgaatgaaatatgtaatatcattagtctt |
47126122 |
T |
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