View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4681_high_14 (Length: 437)
Name: NF4681_high_14
Description: NF4681
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4681_high_14 |
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Alignment Details
Target: chr7 (Bit Score: 288; Significance: 1e-161; HSPs: 7)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 20 - 427
Target Start/End: Original strand, 45270691 - 45271113
Alignment:
| Q |
20 |
attgcctttccaatgaaccccattgcggtgttggctgcatgcatggatgatcaattaattagtaacttcgatcacaccggctatatatat---------- |
109 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||| |
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| T |
45270691 |
attgcctttccaatgaaccccattgcggtgttggctgcatgcatggatgatcaattaattagtaacttctataacaccggctatatatatgtatgtgtct |
45270790 |
T |
|
| Q |
110 |
--------atcttttcaatgtgagttaatgttttcttcataaatgaattttgagagtgatgctactatttcacatctactctctcttcattcataaggta |
201 |
Q |
| |
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|||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45270791 |
atatatatatcttttcaatgtgagttaatgtttttttcaaaaatgaattttgagagtgatgctactatttcacatctactctctcttcattcataaggta |
45270890 |
T |
|
| Q |
202 |
cacaattaattaaataaaataaaaaagctttgatcgataataactgaattacgtaccaaagggggcactgttctgtatattggtaccggcgttttggttc |
301 |
Q |
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|||||||||||||||||||||||| ||||||||||||| |||||||||||||||| ||||| |||| |||||||| | ||||||||||| |||||||| |
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| T |
45270891 |
cacaattaattaaataaaataaaa--gctttgatcgata-taactgaattacgtacaaaaggtggcagtgttctgtgtgttggtaccggccatttggttc |
45270987 |
T |
|
| Q |
302 |
ttactaccagtgacaatggtttttgcagggccatcaccatacataagaatgttaacagcatccttggggacagtgatgtattcgtcatagacaccggcct |
401 |
Q |
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|| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
45270988 |
tttctaccagtgacaatggtctttgcagggccatcaccatacataagaatgttaacagcctccttggggacagtgatgtattcgtcatagacaccggcct |
45271087 |
T |
|
| Q |
402 |
taacgtagataacatatctgcctttg |
427 |
Q |
| |
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|||||||||||||||||||| ||||| |
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| T |
45271088 |
taacgtagataacatatctgtctttg |
45271113 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 177; E-Value: 3e-95
Query Start/End: Original strand, 20 - 427
Target Start/End: Original strand, 45282461 - 45282887
Alignment:
| Q |
20 |
attgcctttccaatgaaccccattgcggtgttggctgcatgcatggatgatcaattaattagtaacttcgatcacaccggctatatat------------ |
107 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||| |||||||||| |||||||||| |
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| T |
45282461 |
attgcctttccaatgaaccccattgcggtgttggctgcattcatggataatcaattaattagtaatttcgatcacattggctatatatgtcaatgttata |
45282560 |
T |
|
| Q |
108 |
---------atatcttttcaatgtgagttaatgttttcttcataaatgaattttgagagtgatgctactatttcacatctactctctcttcattcataag |
198 |
Q |
| |
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||||||||||||||| ||||| ||||||||||| |||||||||||||||||||||| ||| |||| ||| |||||| |||||||||||||| |
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| T |
45282561 |
tgtgtatctatatcttttcaatgttagtta-tgttttcttcaaaaatgaattttgagagtgatgccactttttctcatatactctttcttcattcataag |
45282659 |
T |
|
| Q |
199 |
gtacacaattaattaaataaaataaaaaagctttgatcgataataactgaattacgtaccaaagggggcactgttctgtatattggtaccggcgttttgg |
298 |
Q |
| |
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|| | |||||||||||||||||||||||| |||||||||| |||| ||||||| ||||| |||| ||| | | | | ||| ||| || | |
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| T |
45282660 |
-taaataattaattaaataaaataaaaaagttttgatcgatgataattgaattaagtaccgaaggtggcggtttgcatggtcttgacaccagcagcaaag |
45282758 |
T |
|
| Q |
299 |
ttcttactaccagtgacaatggtttttgcagggccatcaccatacataagaatgttaacagcatccttggggacagtgatgtattcgtcatagacaccgg |
398 |
Q |
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|||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45282759 |
ctctttctaccagtgacaatggtccttgcagggccatcaccatacataagaatgttaacagcatccttggggacagtgatgtattcgtcatagacaccgg |
45282858 |
T |
|
| Q |
399 |
ccttaacgtagataacatatctgcctttg |
427 |
Q |
| |
|
||||||||||||||||||||||||||||| |
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| T |
45282859 |
ccttaacgtagataacatatctgcctttg |
45282887 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 169; E-Value: 2e-90
Query Start/End: Original strand, 20 - 427
Target Start/End: Original strand, 45274218 - 45274646
Alignment:
| Q |
20 |
attgcctttccaatgaaccccattgcggtgttggctgcatgcatggatgatcaattaattagtaacttcgatcacaccggctatatat------------ |
107 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||| |||||||| |||||||||||||||| ||||||||||| |||||||||| |
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| T |
45274218 |
attgcctttccaatgaaccctattgcggtgttggctgcacgcatggataatcaattaattagtaatttcgatcacactggctatatatgtcaatgttata |
45274317 |
T |
|
| Q |
108 |
-----atat----cttttcaatgtgagttaatgttttcttcataaatgaattttgagagtgatgctactatttcacatctactctctcttcattcataag |
198 |
Q |
| |
|
|||| |||||||||| |||||| ||||||||||| |||| ||||||||||||||||||||| |||| || |||||| |||||| ||||||| |
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| T |
45274318 |
tgtatatatttctcttttcaatgcgagtta-tgttttcttcaaaaataaattttgagagtgatgctactttttcttatatactctttcttcaatcataag |
45274416 |
T |
|
| Q |
199 |
gtacacaattaattaaataaaataaaaaa-gctttgatcgataataactgaattacgtaccaaagggggcactgttctgtatattggtaccggcgttttg |
297 |
Q |
| |
|
||| ||||||||| ||||||||||||||| |||||||| |||||||| ||||||||||||| |||| ||| | | | | ||||||||||| |
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|
| T |
45274417 |
gtatacaattaatcaaataaaataaaaaaagctttgatagataataattgaattacgtaccgaaggtggcggtttgcatggtcttggtaccggcagcaaa |
45274516 |
T |
|
| Q |
298 |
gttcttactaccagtgacaatggtttttgcagggccatcaccatacataagaatgttaacagcatccttggggacagtgatgtattcgtcatagacaccg |
397 |
Q |
| |
|
|||||| ||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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|
| T |
45274517 |
gttctttctaccggtgacaatggtccttgcagggccatcaccatacataagaatgttaacagcatccttgggtacagtgatgtattcgtcatagacacca |
45274616 |
T |
|
| Q |
398 |
gccttaacgtagataacatatctgcctttg |
427 |
Q |
| |
|
|||||||||||||||| ||| ||||||||| |
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|
| T |
45274617 |
gccttaacgtagataaaatacctgcctttg |
45274646 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 118; E-Value: 5e-60
Query Start/End: Original strand, 101 - 427
Target Start/End: Original strand, 45293948 - 45294275
Alignment:
| Q |
101 |
tatatatatatcttttcaatgtgagttaatgttttcttcataaatgaattttgagagtgatgctactatttcacatc--tactctctcttcattcataag |
198 |
Q |
| |
|
|||||||| ||||||||||||||||||| ||||||||||| ||||||||||||||||||||| ||||||||| |||| ||| || |||||||||||||| |
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|
| T |
45293948 |
tatatataaatcttttcaatgtgagtta-tgttttcttcaaaaatgaattttgagagtgatgttactatttctcatcattaccctttcttcattcataag |
45294046 |
T |
|
| Q |
199 |
gtacacaattaattaaataaaataaaaaagctttgatcgataataactgaattacgtaccaaagggggcactgttctgtatattggtaccggcgttttgg |
298 |
Q |
| |
|
|||||||||| ||||||||||||||||||| | |||||||| |||| |||||||| |||| |||| ||| | | | | ||| ||| || | |
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|
| T |
45294047 |
gtacacaatttattaaataaaataaaaaagttgtgatcgatgataattgaattacttaccgaaggtggcggtttgcatggtcttgacaccagcagcaccg |
45294146 |
T |
|
| Q |
299 |
ttcttactaccagtgacaatggtttttgcagggccatcaccatacataagaatgttaacagcatccttggggacagtgatgtattcgtcatagacaccgg |
398 |
Q |
| |
|
||||| || || || |||||||| ||| | |||||||||||||||||||||||||||||||| || ||||| | |||||||||||| |||||||| || | |
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|
| T |
45294147 |
ttctttcttccggtaacaatggtctttccggggccatcaccatacataagaatgttaacagcgtctttgggaatagtgatgtattcatcatagacgccag |
45294246 |
T |
|
| Q |
399 |
ccttaacgtagataacatatctgcctttg |
427 |
Q |
| |
|
|||||||||||||| ||||||||||||| |
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| T |
45294247 |
ccttaacgtagatagtatatctgcctttg |
45294275 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 118; E-Value: 5e-60
Query Start/End: Original strand, 101 - 427
Target Start/End: Original strand, 45302908 - 45303235
Alignment:
| Q |
101 |
tatatatatatcttttcaatgtgagttaatgttttcttcataaatgaattttgagagtgatgctactatttcacatc--tactctctcttcattcataag |
198 |
Q |
| |
|
|||||||| ||||||||||||||||||| ||||||||||| ||||||||||||||||||||| ||||||||| |||| ||| || |||||||||||||| |
|
|
| T |
45302908 |
tatatataaatcttttcaatgtgagtta-tgttttcttcaaaaatgaattttgagagtgatgttactatttctcatcattaccctttcttcattcataag |
45303006 |
T |
|
| Q |
199 |
gtacacaattaattaaataaaataaaaaagctttgatcgataataactgaattacgtaccaaagggggcactgttctgtatattggtaccggcgttttgg |
298 |
Q |
| |
|
|||||||||| ||||||||||||||||||| | |||||||| |||| |||||||| |||| |||| ||| | | | | ||| ||| || | |
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|
| T |
45303007 |
gtacacaatttattaaataaaataaaaaagttgtgatcgatgataattgaattacttaccgaaggtggcggtttgcatggtcttgacaccagcagcaccg |
45303106 |
T |
|
| Q |
299 |
ttcttactaccagtgacaatggtttttgcagggccatcaccatacataagaatgttaacagcatccttggggacagtgatgtattcgtcatagacaccgg |
398 |
Q |
| |
|
||||| || || || |||||||| ||| | |||||||||||||||||||||||||||||||| || ||||| | |||||||||||| |||||||| || | |
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|
| T |
45303107 |
ttctttcttccggtaacaatggtctttccggggccatcaccatacataagaatgttaacagcgtctttgggaatagtgatgtattcatcatagacgccag |
45303206 |
T |
|
| Q |
399 |
ccttaacgtagataacatatctgcctttg |
427 |
Q |
| |
|
|||||||||||||| ||||||||||||| |
|
|
| T |
45303207 |
ccttaacgtagatagtatatctgcctttg |
45303235 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 20 - 103
Target Start/End: Original strand, 45293801 - 45293884
Alignment:
| Q |
20 |
attgcctttccaatgaaccccattgcggtgttggctgcatgcatggatgatcaattaattagtaacttcgatcacaccggctat |
103 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
45293801 |
attgcctttccaatgaaccccaatgcggtgttggctgcatgcatggatgatcaattaattagtaacttcgatcacaccggctat |
45293884 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 20 - 103
Target Start/End: Original strand, 45302761 - 45302844
Alignment:
| Q |
20 |
attgcctttccaatgaaccccattgcggtgttggctgcatgcatggatgatcaattaattagtaacttcgatcacaccggctat |
103 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
45302761 |
attgcctttccaatgaaccccaatgcggtgttggctgcatgcatggatgatcaattaattagtaacttcgatcacaccggctat |
45302844 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 380 - 425
Target Start/End: Original strand, 38583244 - 38583289
Alignment:
| Q |
380 |
tattcgtcatagacaccggccttaacgtagataacatatctgcctt |
425 |
Q |
| |
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||||||||||||||||| ||||| |||||||| |||||||| |||| |
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|
| T |
38583244 |
tattcgtcatagacaccagccttgacgtagatgacatatctacctt |
38583289 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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