View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4681_high_25 (Length: 374)
Name: NF4681_high_25
Description: NF4681
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4681_high_25 |
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Alignment Details
Target: chr2 (Bit Score: 214; Significance: 1e-117; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 129 - 358
Target Start/End: Original strand, 32032384 - 32032613
Alignment:
| Q |
129 |
cttgcttaaagattgggtgggtgcagatttgtcatataatttggtgatcggtttcataaactcgaaagggtctgcttcatttggttctgataaccctcag |
228 |
Q |
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| T |
32032384 |
cttgcttaaagattgggtgggtgcagatttgtcatataattcggtgatcggtttcataaactcgaaagggtctgcttcatttggttctgataaccctcag |
32032483 |
T |
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| Q |
229 |
gggtctatgttactaacatatttgactcatcccgtgatgagggttattacgcgtctaattgaaactgcaggtctcaaggcgtcagaactacttctacttt |
328 |
Q |
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| T |
32032484 |
gggtctatgttactaacatatttgactcatcccgcgatgagggttattacgcgtctaattgaaactgcaggtctcaaggcgtcagaactacctccacttt |
32032583 |
T |
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| Q |
329 |
ggtaccgactttttatctgtctcagttcat |
358 |
Q |
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| T |
32032584 |
ggtaccgactttttatctgtctcagttcat |
32032613 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 101; E-Value: 6e-50
Query Start/End: Original strand, 1 - 101
Target Start/End: Original strand, 32032256 - 32032356
Alignment:
| Q |
1 |
aagttgtcgttatctctctgctctccacttggagaaggagatgtaatatttctattataaattatgaagtgtgcaatgaaagtgttgttctcatgctatg |
100 |
Q |
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| T |
32032256 |
aagttgtcgttatctctctgctctccacttggagaaggagatgtaatatttctattataaattatgaagtgtgcaatgaaagtgttgttctcatgctatg |
32032355 |
T |
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| Q |
101 |
a |
101 |
Q |
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| T |
32032356 |
a |
32032356 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 15 - 77
Target Start/End: Original strand, 32078762 - 32078824
Alignment:
| Q |
15 |
tctctgctctccacttggagaaggagatgtaatatttctattataaattatgaagtgtgcaat |
77 |
Q |
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| T |
32078762 |
tctctgttctctacttggagaaggacatgtaatatttgtacaataaattaagaagtgtgcaat |
32078824 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 10 - 86
Target Start/End: Original strand, 32065427 - 32065503
Alignment:
| Q |
10 |
ttatctctctgctctccacttggagaaggagatgtaatatttctattataaattatgaagtgtgcaatgaaagtgtt |
86 |
Q |
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| T |
32065427 |
ttatctctttgttctccacgtggagaaggacttgtaatatgggtactataaattaagaagtgtgttatgaaagtgtt |
32065503 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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