View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4681_high_27 (Length: 354)
Name: NF4681_high_27
Description: NF4681
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4681_high_27 |
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Alignment Details
Target: chr1 (Bit Score: 221; Significance: 1e-121; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 18 - 342
Target Start/End: Original strand, 9194234 - 9194558
Alignment:
| Q |
18 |
ataaatgatcgggagagatattttgttccacattaataagaggatgcttgatgattcaaggatggaaccacatatttgtatctccatctccaaaaaattt |
117 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||| ||| || |
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| T |
9194234 |
ataaatgatcgggagagatattttgttccacattaataagaggatgcttgacgatccaaggatggaaccacatatttgtatctccatcaacaatttttta |
9194333 |
T |
|
| Q |
118 |
ggtgaaaccatcttttaacacatcaagagacttgaggattgcattccaaataggtgaacagtccttgctttttatataaatatattacactcttttaagt |
217 |
Q |
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|| ||||||||||||||| | |||||||||||||||||||||||||||||| || |||| ||||||| ||| |||||||| || |||| ||||||||||| |
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| T |
9194334 |
ggcgaaaccatcttttaaaatatcaagagacttgaggattgcattccaaattggcgaaccgtccttgatttgtatataaacattttaccctcttttaagt |
9194433 |
T |
|
| Q |
218 |
atttatcggcaaggatagacacccataattttgtgtctgattgcttaagactccaaacaagttttcccaacaaagttgtgttttgttatcgagctggctg |
317 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
9194434 |
atttattggcaaggatagacacccataattttgtgtctgattgcttaagacaacaaacaagttttcccaacaaagttgtgttttgttatcatgctggctg |
9194533 |
T |
|
| Q |
318 |
aaatcctacacctccaagcttccta |
342 |
Q |
| |
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|||||||| |||||||||||||||| |
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| T |
9194534 |
aaatcctagacctccaagcttccta |
9194558 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 116; E-Value: 6e-59
Query Start/End: Original strand, 29 - 342
Target Start/End: Complemental strand, 37501293 - 37500980
Alignment:
| Q |
29 |
ggagagatattttgtt-ccacattaataagaggatgcttgatgattcaaggatggaaccacatatttgtatctccatctccaaaaaatttggtgaaacca |
127 |
Q |
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||||| |||||||||| |||| ||||||||||||| |||| ||| |||||||||| |||||||||||||||||||||||| | || ||||||| |
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| T |
37501293 |
ggagatatattttgttaccacgctaataagaggatgtttgacgatccaaggatggatccacatatttgtatctccatctccgttttgta-ggagaaacca |
37501195 |
T |
|
| Q |
128 |
tcttttaacacatcaagagacttgaggattgcattccaaataggtgaaca-gtccttgctttttatataaatatattacactcttttaagtatttatcgg |
226 |
Q |
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|||| |||||||| ||||| |||||||||||||||||||||||||||| || ||||||||| || ||| ||||| | || ||| ||||||||||| | |
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| T |
37501194 |
tcttctaacacataaagagttttgaggattgcattccaaataggtgaacctgtttttgctttttctaaaaacatattcccct-tttcaagtatttatcag |
37501096 |
T |
|
| Q |
227 |
caaggatagacacccataattttgtgtctgattgcttaagactccaaacaagttttcccaacaaagttgtgttttgttatcgagctggctgaaatcctac |
326 |
Q |
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||||||||||||||||||| || ||||||||||| | ||||||||||||||||||||||||||||||||||||| ||||| ||| |||| ||||| |
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| T |
37501095 |
caaggatagacacccataacttcttgtctgattgcacgaaactccaaacaagttttcccaacaaagttgtgttttgtagtcgagttggatgaactcctag |
37500996 |
T |
|
| Q |
327 |
acctccaagcttccta |
342 |
Q |
| |
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|||||||||||||||| |
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|
| T |
37500995 |
acctccaagcttccta |
37500980 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 47; Significance: 9e-18; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 18 - 234
Target Start/End: Complemental strand, 8989478 - 8989260
Alignment:
| Q |
18 |
ataaatgatcgggagagatattttgttccacattaataagaggatgcttgatgattcaa-ggatggaaccacatatttgtatctccatctccaaaaaatt |
116 |
Q |
| |
|
||||||||| ||| | ||||||||| || |||||||||||||| ||||| | ||||| ||||||| ||||||| |||||||| ||||||||| | |
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|
| T |
8989478 |
ataaatgatttggaaatatattttgtatcatattaataagaggatacttgacggttcaaaggatggagccacataattgtatcttcatctccaattttgt |
8989379 |
T |
|
| Q |
117 |
tggtgaaaccatcttttaacacatcaagagacttgaggattgcattccaaataggtgaaca-gtccttgctttttatataaatatattacactcttttaa |
215 |
Q |
| |
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|| | ||||||| | ||| ||||| ||| |||| ||||| || || ||||||| |||| ||| ||||||||| | ||||||||||| |||||| || |
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| T |
8989378 |
aggcggaaccatcatcaaacgcatcacgagttttgatgattgaatacctaataggtaaacatgtctttgctttttctgaaaatatattaccctctttcaa |
8989279 |
T |
|
| Q |
216 |
gtatttatcggcaaggata |
234 |
Q |
| |
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||||||||||||||||||| |
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| T |
8989278 |
gtatttatcggcaaggata |
8989260 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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