View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4681_high_3 (Length: 578)
Name: NF4681_high_3
Description: NF4681
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4681_high_3 |
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Alignment Details
Target: chr1 (Bit Score: 226; Significance: 1e-124; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 17 - 313
Target Start/End: Complemental strand, 43364173 - 43363875
Alignment:
| Q |
17 |
tggtaacaatattgtgctctatttataggcaaaaataaaaagatgtacctccatccaat-taagactttgtgctaggaggattcacctactcatgatata |
115 |
Q |
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| T |
43364173 |
tggtaacaatattgtgctctatttataggcaaaaataaaaagatgtacctccatccaatctaagactttgtgctaggaggattcacctactcatgatata |
43364074 |
T |
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| Q |
116 |
ttttttaaatnnnnnnnta-ttcgttgttttgatttatgtgaaagggcaccctgattttagtttttattttgtttaatggacaagtgacgactcaaacat |
214 |
Q |
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| T |
43364073 |
ttttttaaataaaaaaaaaattcattgttttgatttatgtgaaagggcaccctgattttagtttttcttttgtataatggtcaagtgacgactcaaacat |
43363974 |
T |
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| Q |
215 |
gaatagtagctagcttgcactcataattataattcattcctatggaaaatccttgtatgctcacaatgatttgagcataatgtttcaacattgacatac |
313 |
Q |
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| T |
43363973 |
gaatagtagctagcttgaactcataattataattcattcctatggaaaatccttgtatggtcacaatgatttgagcataatttttcaacatagacatac |
43363875 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 414 - 560
Target Start/End: Complemental strand, 43363774 - 43363610
Alignment:
| Q |
414 |
tactttgtgtgcacgatccttgtacataatttcgattaggagtagtgatcacttatcagttagaactatctccacttgcattacttaattaa---ttcaa |
510 |
Q |
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| T |
43363774 |
tactttgtgtgcacgatccttgtacataatttcgattaggagtagtgatcacttatcagttagaactatctccacttgcattacttcattaattcttcaa |
43363675 |
T |
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| Q |
511 |
catctaat---------------tatacagataccagcaaaccaaatgagttgccaccatatgct |
560 |
Q |
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| T |
43363674 |
catctaatttatggaacaccagatatacagataccagcaaaccaaatgagttgccaccatatgct |
43363610 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 448 - 512
Target Start/End: Complemental strand, 43356216 - 43356152
Alignment:
| Q |
448 |
attaggagtagtgatcacttatcagttagaactatctccacttgcattacttaattaattcaaca |
512 |
Q |
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||||| ||||||||||||||| | ||||||||||| |||| ||||||||||||||||||| |||| |
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| T |
43356216 |
attagaagtagtgatcacttagccgttagaactatttccatttgcattacttaattaattaaaca |
43356152 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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