View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4681_high_30 (Length: 347)
Name: NF4681_high_30
Description: NF4681
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4681_high_30 |
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| [»] scaffold0007 (6 HSPs) |
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| [»] scaffold0573 (1 HSPs) |
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Alignment Details
Target: scaffold0007 (Bit Score: 117; Significance: 1e-59; HSPs: 6)
Name: scaffold0007
Description:
Target: scaffold0007; HSP #1
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 1 - 200
Target Start/End: Original strand, 64941 - 65144
Alignment:
| Q |
1 |
ccaaatttatttaaaaaacgcgttctcattagtctagcctttcattggctaaacagtattagcaaacaaatttagtggttaatccacgtaattaatata- |
99 |
Q |
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| T |
64941 |
ccaaatttatttcaaaaacgcgttctcattagtctagcctttcattggctaaacagtattagtaaacaaatttagtggttaatccacgtaattaatgtat |
65040 |
T |
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| Q |
100 |
nnnnnnnnagaggatgattaatacatatattag---cnnnnnnnaagtataatacatatattagttgttgagttgaattcaacactttctgcatatgtat |
196 |
Q |
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| T |
65041 |
atttttttagaggatgattaatacatatattagtttttttttttaagtataatacatatattaattgttgagttgaattcaacactttctgcatatgtat |
65140 |
T |
|
| Q |
197 |
tatt |
200 |
Q |
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|
|||| |
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|
| T |
65141 |
tatt |
65144 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0007; HSP #2
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 236 - 329
Target Start/End: Original strand, 65190 - 65283
Alignment:
| Q |
236 |
actatatttaattagttttaatattttcttaattcattcatgtaatgtaaagtatggtccctggtgttctttcgaatcctttataactgttacc |
329 |
Q |
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| T |
65190 |
actatatttaattagttttattattttcttaattcattaatgtaatgtaaagtatggtccctggtgttctttcgaatcctttataactgttacc |
65283 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0007; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 146 - 200
Target Start/End: Original strand, 28931 - 28985
Alignment:
| Q |
146 |
taatacatatattagttgttgagttgaattcaacactttctgcatatgtattatt |
200 |
Q |
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| T |
28931 |
taatacatatattagttgttgagttgaattcaacactttctgcatatgtattatt |
28985 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0007; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 236 - 283
Target Start/End: Original strand, 29034 - 29081
Alignment:
| Q |
236 |
actatatttaattagttttaatattttcttaattcattcatgtaatgt |
283 |
Q |
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| T |
29034 |
actatatttaattagttttaatattttcttaattcattcatgtaatgt |
29081 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0007; HSP #5
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 284 - 329
Target Start/End: Original strand, 29655 - 29700
Alignment:
| Q |
284 |
aaagtatggtccctggtgttctttcgaatcctttataactgttacc |
329 |
Q |
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| T |
29655 |
aaagtatggtctctggtgttctttcgaatcctttataactgttacc |
29700 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0007; HSP #6
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 235 - 329
Target Start/End: Original strand, 25872 - 25964
Alignment:
| Q |
235 |
gactatatttaattagttttaatattttcttaattcattcatgtaatgtaaagtatggtccctggtgt--tctttcgaatcctttataactgttacc |
329 |
Q |
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| T |
25872 |
gactatatttaattaattttgttattttctta----attcatgtaatgtggagtatggtccctagtgttgtttttcaaatcctttataactgttacc |
25964 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 48; Significance: 2e-18; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 153 - 200
Target Start/End: Complemental strand, 29737824 - 29737777
Alignment:
| Q |
153 |
tatattagttgttgagttgaattcaacactttctgcatatgtattatt |
200 |
Q |
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| T |
29737824 |
tatattagttgttgagttgaattcaacactttctgcatatgtattatt |
29737777 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 226 - 293
Target Start/End: Original strand, 28899268 - 28899331
Alignment:
| Q |
226 |
cggtcacatgactatatttaattagttttaatattttcttaattcattcatgtaatgtaaagtatggt |
293 |
Q |
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| T |
28899268 |
cggtcacatgactatatttaattagttttattattttcttaattc----atgtaatgtaaattatggt |
28899331 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 227 - 269
Target Start/End: Complemental strand, 29737722 - 29737680
Alignment:
| Q |
227 |
ggtcacatgactatatttaattagttttaatattttcttaatt |
269 |
Q |
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| T |
29737722 |
ggtcacatgactatatttaattagttttattatttttttaatt |
29737680 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0573 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: scaffold0573
Description:
Target: scaffold0573; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 226 - 272
Target Start/End: Complemental strand, 10526 - 10480
Alignment:
| Q |
226 |
cggtcacatgactatatttaattagttttaatattttcttaattcat |
272 |
Q |
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| T |
10526 |
cggtcacatgactatatttaattagttttattattttcttaattcat |
10480 |
T |
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