View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4681_high_33 (Length: 342)
Name: NF4681_high_33
Description: NF4681
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4681_high_33 |
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Alignment Details
Target: chr5 (Bit Score: 281; Significance: 1e-157; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 18 - 329
Target Start/End: Complemental strand, 23967081 - 23966776
Alignment:
| Q |
18 |
cagagacatttataagatccccagaatagattggcaaggagacccatgtggaccaactggttttagatgggaaggtctcatttgcggtggtgcgaataat |
117 |
Q |
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| T |
23967081 |
cagagacatttataagatccccagaatagattggcaaggagacccatgtggaccaactggttttagatgggaaggtctcatttgcggtggtgcgaataat |
23966982 |
T |
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| Q |
118 |
ccaagaataatttcactgtgaatacttgtattctcaaattttacaatattgttctattaattggaggtcaagtcgactaataaacgggtgtggacattga |
217 |
Q |
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| T |
23966981 |
ccaagaataatttcactgtgagtacttgtattctcaaattttacaatattgttctattaattggaggtcaagtcgactaataaacgggtgtggacattga |
23966882 |
T |
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| Q |
218 |
gctttatgttcggattgccccaacctatgtctttaaacaaaaagcaacttggtgcttgcaaatccttttaggatacgttggagttagaacacaatttctc |
317 |
Q |
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| T |
23966881 |
gctttatgttcggattgccccaacctatgtctttaaacaaaaagcaacttggtgcttgcaaatcctttcaggatac------gttagaacacaatttctc |
23966788 |
T |
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| Q |
318 |
taggttcaaaat |
329 |
Q |
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|||||||||||| |
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| T |
23966787 |
taggttcaaaat |
23966776 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 140; E-Value: 3e-73
Query Start/End: Original strand, 18 - 197
Target Start/End: Original strand, 23997273 - 23997452
Alignment:
| Q |
18 |
cagagacatttataagatccccagaatagattggcaaggagacccatgtggaccaactggttttagatgggaaggtctcatttgcggtggtgcgaataat |
117 |
Q |
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|||||||||||| || ||| ||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||| |||| | |||| ||||||| |
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| T |
23997273 |
cagagacatttacaatatctccagaatagattggcaaggtgacccatgtggaccaacaggttttagatgggaaggtctcacttgcagcggtgagaataat |
23997372 |
T |
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| Q |
118 |
ccaagaataatttcactgtgaatacttgtattctcaaattttacaatattgttctattaattggaggtcaagtcgactaa |
197 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23997373 |
ccaagaataatttcactgtgagtacttgtattctcaaattttacaatattgttctattaattggaggtcaagtcgactaa |
23997452 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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