View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4681_high_35 (Length: 339)
Name: NF4681_high_35
Description: NF4681
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4681_high_35 |
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Alignment Details
Target: chr6 (Bit Score: 298; Significance: 1e-167; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 21 - 322
Target Start/End: Original strand, 13877594 - 13877895
Alignment:
| Q |
21 |
agcagagacctttatgaacaacaaaaatactgaaactccataatatgtcaaagtgtcggagaaatggaagcatttcttagagagtaacacaatttgttta |
120 |
Q |
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| T |
13877594 |
agcagagacctttatgaacaacaaaaatactgaaactccataatatgtcaaagtgtcggagaaatggaagcatttcttagagagtaacacaatttgttta |
13877693 |
T |
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| Q |
121 |
ttacaaatcccaactacatgaattatttgagaattatcggacactaaatgtgaatatctacgtgttagactcaaattttgctcactatcttattagagtt |
220 |
Q |
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| T |
13877694 |
ttacaaatcccaactacatgaattatttgagaattatcggacactaaatgtgaatatctacgtgttagactcaaattttgctcactatcttattagagtt |
13877793 |
T |
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| Q |
221 |
tagtccattctgccaaacctagcctttgtttctaaatacattgagtcatgctaaataggaatgctcttagtttaacgagtttataattaattggtattca |
320 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13877794 |
tagtccattctgccaaacctaacctttgtttctaaatacattgagtcatgctaaataggaatgctcttagtttaacgagtttataattaattggtattca |
13877893 |
T |
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| Q |
321 |
tc |
322 |
Q |
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|| |
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| T |
13877894 |
tc |
13877895 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 29 - 177
Target Start/End: Original strand, 13865093 - 13865240
Alignment:
| Q |
29 |
cctttatgaacaacaaaaatactgaaactccataatatgtcaaagtgtcggagaaatggaagcatttcttagagagtaacacaatttgtttattacaaat |
128 |
Q |
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|||||||||||||||||| || |||||||| ||| ||||||||||||||| ||||||||||||||||||||||||||||| || |||||||||||||||| |
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| T |
13865093 |
cctttatgaacaacaaaa-tattgaaactctatattatgtcaaagtgtcgcagaaatggaagcatttcttagagagtaacgcagtttgtttattacaaat |
13865191 |
T |
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| Q |
129 |
cccaactacatgaattatttgagaattatcggacactaaatgtgaatat |
177 |
Q |
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| T |
13865192 |
cccaactacataaattatttgagaattatcggacactaaatgtgaatat |
13865240 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 29 - 157
Target Start/End: Original strand, 13895859 - 13895987
Alignment:
| Q |
29 |
cctttatgaacaacaaaaatactgaaactccataatatgtcaaagtgtcggagaaatggaagcatttcttagagagtaacacaatttgtttattacaaat |
128 |
Q |
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|||||||||||||| |||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
13895859 |
cctttatgaacaactaaaatactgaaactccataacatgtcaaagtgttggagaaatggaagcatttcttagagagtaacacaatttatttattacaaat |
13895958 |
T |
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| Q |
129 |
cccaactacatgaattatttgagaattat |
157 |
Q |
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||||||||||||||||||||||||||||| |
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| T |
13895959 |
cccaactacatgaattatttgagaattat |
13895987 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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