View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4681_high_45 (Length: 278)
Name: NF4681_high_45
Description: NF4681
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4681_high_45 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 249; Significance: 1e-138; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 14 - 262
Target Start/End: Complemental strand, 32032278 - 32032030
Alignment:
| Q |
14 |
gagcagagagataacgacaactttattgcaatctaaaaccactagtaggaaataactatattaaattgatacaattaaaatacaataccaagaccttccc |
113 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32032278 |
gagcagagagataacgacaactttattgcaatctaaaaccactagtaggaaataactatattaaattgatacaattaaaatacaataccaagaccttccc |
32032179 |
T |
|
| Q |
114 |
aaagagaaatctaagcttatcttactacttattaggaaccttaataaaacccacgtgtgtagtattttctactttagtaagggtttgaagatcataagct |
213 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32032178 |
aaagagaaatctaagcttatcttactacttattaggaaccttaataaaacccacgtgtgtagtattttctactttagtaagggtttgaagatcataagct |
32032079 |
T |
|
| Q |
214 |
ttccaacaccttgagttatccttgtggtagaaatacccaacacacttac |
262 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32032078 |
ttccaacaccttgagttatccttgtggtagaaatacccaacacacttac |
32032030 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 30 - 262
Target Start/End: Complemental strand, 32065423 - 32065170
Alignment:
| Q |
30 |
acaactttattgcaatctaaaaccactagtaggaaataactatattaaattgatacaattaaaatacaataccaa---------------------gacc |
108 |
Q |
| |
|
|||||||||||||| |||||||| |||||||||||||||| | |||||||||||||||||||||||||||||||| |||| |
|
|
| T |
32065423 |
acaactttattgcattctaaaacaactagtaggaaataacaaaattaaattgatacaattaaaatacaataccaaaaaaaaaaaaaaaaataccaagacc |
32065324 |
T |
|
| Q |
109 |
ttcccaaagagaaatctaagcttatcttactacttattaggaaccttaataaaacccacgtgtgtagtattttctactttagtaagggtttgaagatcat |
208 |
Q |
| |
|
|||||| || |||||||||||||||||| ||||||||||| ||||||||| ||||||| ||||| ||||||| ||| ||||||| ||||||||||||| |
|
|
| T |
32065323 |
ttcccatggaaaaatctaagcttatcttattacttattaggcaccttaatataacccacatgtgtggtattttgaactctagtaagagtttgaagatcat |
32065224 |
T |
|
| Q |
209 |
aagctttccaacaccttgagttatccttgtggtagaaatacccaacacacttac |
262 |
Q |
| |
|
||||| ||||||||||||| | |||||| ||||||||||||||||||||||||| |
|
|
| T |
32065223 |
aagctatccaacaccttgattcatccttatggtagaaatacccaacacacttac |
32065170 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University