View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4681_high_48 (Length: 265)
Name: NF4681_high_48
Description: NF4681
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4681_high_48 |
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Alignment Details
Target: chr2 (Bit Score: 213; Significance: 1e-117; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 15 - 255
Target Start/End: Complemental strand, 28677501 - 28677262
Alignment:
| Q |
15 |
ataattgtcaaagtatgaacaattttcaagtaccattagtccgtagaccatacgaaatacttctcctctctagctatcacttgcatattataacatattt |
114 |
Q |
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| T |
28677501 |
ataattgtcaaagtatgaacaattttcaagtaccgttagtccgtagaccatacaagatacttctcctctctagctatcacttgcatattataacatattt |
28677402 |
T |
|
| Q |
115 |
ctccttagatatttaggtaaatttaagattttttaagcaattaggtttccatgaaaaaattgttaatagttcatgtatcaggctaatagttaaggaaaca |
214 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
28677401 |
ctccttagatatttaggtaaatttaagattttttaaggaattaggtttccatgaaaaaattgtt-atagttcatgtatcaggctaatagttaaggaaaca |
28677303 |
T |
|
| Q |
215 |
ttcatttttgagtcttttgattaagtcgaaaaatatctctg |
255 |
Q |
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|||||||||||||||||||||||||| |||||||||||||| |
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| T |
28677302 |
ttcatttttgagtcttttgattaagttgaaaaatatctctg |
28677262 |
T |
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