View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4681_high_58 (Length: 240)
Name: NF4681_high_58
Description: NF4681
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4681_high_58 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 108; Significance: 2e-54; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 105 - 223
Target Start/End: Original strand, 4034074 - 4034193
Alignment:
| Q |
105 |
tctaagtgtttgaaaagtcattgccattgaaaaaga-agtttcttgtaagttaaagaattcaaaacacaataagaatcacattgtgtttttcacttgcct |
203 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
4034074 |
tctaagtgtttgaaaagtcattgccattgaaaaagagagtttcttgtaagttaaagaattcaaaacacaataagaatcacattgtgtttctcacttgcct |
4034173 |
T |
|
| Q |
204 |
caatcatctatgacatgact |
223 |
Q |
| |
|
|||||||||||||||||||| |
|
|
| T |
4034174 |
caatcatctatgacatgact |
4034193 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 1 - 103
Target Start/End: Original strand, 4033904 - 4034006
Alignment:
| Q |
1 |
tgaagatattctaatccttaaacgcatttgcaagtttatgatttgagacgattacaaatggcggagccatacatccttagagttaatgtgattgacattt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4033904 |
tgaagatattctaatccttaaacgcatttgcaagtttatgatttgagacgattacaaatggcggagccatacatccttagagttaatgtgattgacattt |
4034003 |
T |
|
| Q |
101 |
gtt |
103 |
Q |
| |
|
||| |
|
|
| T |
4034004 |
gtt |
4034006 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University