View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4681_high_62 (Length: 236)

Name: NF4681_high_62
Description: NF4681
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4681_high_62
NF4681_high_62
[»] chr6 (2 HSPs)
chr6 (19-223)||(11390691-11390895)
chr6 (19-223)||(11419729-11419933)
[»] chr3 (16 HSPs)
chr3 (31-152)||(24108891-24109012)
chr3 (31-148)||(24614659-24614776)
chr3 (31-152)||(24116598-24116719)
chr3 (39-153)||(23693213-23693327)
chr3 (39-153)||(23711653-23711767)
chr3 (39-153)||(23730109-23730223)
chr3 (39-153)||(23748564-23748678)
chr3 (31-152)||(23689756-23689877)
chr3 (31-152)||(24061993-24062114)
chr3 (160-223)||(23693128-23693191)
chr3 (160-223)||(23711568-23711631)
chr3 (160-223)||(23730024-23730087)
chr3 (160-223)||(23748479-23748542)
chr3 (160-223)||(23689670-23689733)
chr3 (160-223)||(24061907-24061970)
chr3 (160-215)||(24116742-24116797)


Alignment Details
Target: chr6 (Bit Score: 201; Significance: 1e-110; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 19 - 223
Target Start/End: Complemental strand, 11390895 - 11390691
Alignment:
Q  19 ccaataacaattcttgcacaatacacagcagaagcagcaatcatagaaggtttatagtcacacacaattgaataatgtgtcaagctcagctctgaaaaga 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11390895 ccaataacaattcttgcacaatacacagcagaagcagcaatcatagaaggtttatagtcacacacaattgaataatgtgtcaagctcagctctgaaaaga 11390796  T
Q  119 aaaacaccatattttccatcatcttgtcttcatccttaatatttctaacaaggaacacataaggtgttgtaactgttaaattccaatcaagtttttgcag 218  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  11390795 aaaacaccatattttccatcatcttgtcttcatccttaatatttctaacaaggaacacataaggtgttgtaactgttaaattccaatccagtttttgcag 11390696  T
Q  219 tataa 223  Q
    |||||    
T  11390695 tataa 11390691  T

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Target: chr6; HSP #2
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 19 - 223
Target Start/End: Original strand, 11419729 - 11419933
Alignment:
Q  19 ccaataacaattcttgcacaatacacagcagaagcagcaatcatagaaggtttatagtcacacacaattgaataatgtgtcaagctcagctctgaaaaga 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11419729 ccaataacaattcttgcacaatacacagcagaagcagcaatcatagaaggtttatagtcacacacaattgaataatgtgtcaagctcagctctgaaaaga 11419828  T
Q  119 aaaacaccatattttccatcatcttgtcttcatccttaatatttctaacaaggaacacataaggtgttgtaactgttaaattccaatcaagtttttgcag 218  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  11419829 aaaacaccatattttccatcatcttgtcttcatccttaatatttctaacaaggaacacataaggtgttgtaactgttaaattccaatccagtttttgcag 11419928  T
Q  219 tataa 223  Q
    |||||    
T  11419929 tataa 11419933  T

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Target: chr3 (Bit Score: 58; Significance: 2e-24; HSPs: 16)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 31 - 152
Target Start/End: Original strand, 24108891 - 24109012
Alignment:
Q  31 cttgcacaatacacagcagaagcagcaatcatagaaggtttatagtcacacacaattgaataatgtgtcaagctcagctctgaaaagaaaaacaccatat 130  Q
    |||||||||||||| | | ||||||||||||| ||||| |||||||| |||||||| |||| || ||||||||| || || ||||||||||||||||| |    
T  24108891 cttgcacaatacacggaacaagcagcaatcattgaaggcttatagtcgcacacaatagaatgatttgtcaagctgagttcagaaaagaaaaacaccatct 24108990  T
Q  131 tttccatcatcttgtcttcatc 152  Q
    | ||||| ||||| ||||||||    
T  24108991 tctccatgatcttatcttcatc 24109012  T

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Target: chr3; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 31 - 148
Target Start/End: Complemental strand, 24614776 - 24614659
Alignment:
Q  31 cttgcacaatacacagcagaagcagcaatcatagaaggtttatagtcacacacaattgaataatgtgtcaagctcagctctgaaaagaaaaacaccatat 130  Q
    |||||||||||||| | | ||||||||||||| ||||| |||||||| |||||||| || | || ||||||||||||||| || |||||||||||||| |    
T  24614776 cttgcacaatacacggaacaagcagcaatcattgaaggcttatagtcgcacacaatggattgatttgtcaagctcagctcagagaagaaaaacaccatgt 24614677  T
Q  131 tttccatcatcttgtctt 148  Q
    | ||||| ||||||||||    
T  24614676 tctccatgatcttgtctt 24614659  T

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Target: chr3; HSP #3
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 31 - 152
Target Start/End: Original strand, 24116598 - 24116719
Alignment:
Q  31 cttgcacaatacacagcagaagcagcaatcatagaaggtttatagtcacacacaattgaataatgtgtcaagctcagctctgaaaagaaaaacaccatat 130  Q
    |||||||||||||| | | ||||||||||||  ||||| || ||||| |||||||| |||| || ||||||||| |  || |||||||||||||||||||    
T  24116598 cttgcacaatacacggaacaagcagcaatcaatgaaggcttgtagtcgcacacaatagaatgatttgtcaagctgacttccgaaaagaaaaacaccatat 24116697  T
Q  131 tttccatcatcttgtcttcatc 152  Q
    | ||||| ||||||||||||||    
T  24116698 tctccatgatcttgtcttcatc 24116719  T

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Target: chr3; HSP #4
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 39 - 153
Target Start/End: Complemental strand, 23693327 - 23693213
Alignment:
Q  39 atacacagcagaagcagcaatcatagaaggtttatagtcacacacaattgaataatgtgtcaagctcagctctgaaaagaaaaacaccatattttccatc 138  Q
    |||||| ||| ||||||||||||||||||| || ||||| |||||||| |||| || ||| ||||| || || ||||||||||||||||| |  |||||     
T  23693327 atacacggcacaagcagcaatcatagaaggcttgtagtcgcacacaatagaatgatttgttaagctgagttcagaaaagaaaaacaccatgtgctccatg 23693228  T
Q  139 atcttgtcttcatcc 153  Q
    |||||||||||||||    
T  23693227 atcttgtcttcatcc 23693213  T

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Target: chr3; HSP #5
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 39 - 153
Target Start/End: Complemental strand, 23711767 - 23711653
Alignment:
Q  39 atacacagcagaagcagcaatcatagaaggtttatagtcacacacaattgaataatgtgtcaagctcagctctgaaaagaaaaacaccatattttccatc 138  Q
    |||||| ||| ||||||||||||||||||| || ||||| |||||||| |||| || ||| ||||| || || ||||||||||||||||| |  |||||     
T  23711767 atacacggcacaagcagcaatcatagaaggcttgtagtcgcacacaatagaatgatttgttaagctgagttcagaaaagaaaaacaccatgtgctccatg 23711668  T
Q  139 atcttgtcttcatcc 153  Q
    |||||||||||||||    
T  23711667 atcttgtcttcatcc 23711653  T

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Target: chr3; HSP #6
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 39 - 153
Target Start/End: Complemental strand, 23730223 - 23730109
Alignment:
Q  39 atacacagcagaagcagcaatcatagaaggtttatagtcacacacaattgaataatgtgtcaagctcagctctgaaaagaaaaacaccatattttccatc 138  Q
    |||||| ||| ||||||||||||||||||| || ||||| |||||||| |||| || ||| ||||| || || ||||||||||||||||| |  |||||     
T  23730223 atacacggcacaagcagcaatcatagaaggcttgtagtcgcacacaatagaatgatttgttaagctgagttcagaaaagaaaaacaccatgtgctccatg 23730124  T
Q  139 atcttgtcttcatcc 153  Q
    |||||||||||||||    
T  23730123 atcttgtcttcatcc 23730109  T

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Target: chr3; HSP #7
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 39 - 153
Target Start/End: Complemental strand, 23748678 - 23748564
Alignment:
Q  39 atacacagcagaagcagcaatcatagaaggtttatagtcacacacaattgaataatgtgtcaagctcagctctgaaaagaaaaacaccatattttccatc 138  Q
    |||||| ||| ||||||||||||||||||| || ||||| |||||||| |||| || ||| ||||| || || ||||||||||||||||| |  |||||     
T  23748678 atacacggcacaagcagcaatcatagaaggcttgtagtcgcacacaatagaatgatttgttaagctgagttcagaaaagaaaaacaccatgtgctccatg 23748579  T
Q  139 atcttgtcttcatcc 153  Q
    |||||||||||||||    
T  23748578 atcttgtcttcatcc 23748564  T

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Target: chr3; HSP #8
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 31 - 152
Target Start/End: Complemental strand, 23689877 - 23689756
Alignment:
Q  31 cttgcacaatacacagcagaagcagcaatcatagaaggtttatagtcacacacaattgaataatgtgtcaagctcagctctgaaaagaaaaacaccatat 130  Q
    |||||||||||||| | | ||||||||||||  ||||| || ||||| || ||||| |||| || ||||||||| || || ||||||||||||||||| |    
T  23689877 cttgcacaatacacggaacaagcagcaatcaatgaaggcttgtagtcgcagacaatggaatgatttgtcaagctgagttccgaaaagaaaaacaccatgt 23689778  T
Q  131 tttccatcatcttgtcttcatc 152  Q
    | ||||| ||||||||||||||    
T  23689777 tctccatgatcttgtcttcatc 23689756  T

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Target: chr3; HSP #9
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 31 - 152
Target Start/End: Complemental strand, 24062114 - 24061993
Alignment:
Q  31 cttgcacaatacacagcagaagcagcaatcatagaaggtttatagtcacacacaattgaataatgtgtcaagctcagctctgaaaagaaaaacaccatat 130  Q
    |||||||||||||| | | ||||||||||||  ||||| || ||||| || ||||| |||| || ||||||||| || || ||||||||||||||||| |    
T  24062114 cttgcacaatacacggaacaagcagcaatcaatgaaggcttgtagtcgcagacaatggaatgatttgtcaagctgagttccgaaaagaaaaacaccatgt 24062015  T
Q  131 tttccatcatcttgtcttcatc 152  Q
    | ||||| ||||||||||||||    
T  24062014 tctccatgatcttgtcttcatc 24061993  T

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Target: chr3; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 160 - 223
Target Start/End: Complemental strand, 23693191 - 23693128
Alignment:
Q  160 tttctaacaaggaacacataaggtgttgtaactgttaaattccaatcaagtttttgcagtataa 223  Q
    ||||||||||| || ||||||||||||| |||||||||| ||||| |||||| |||||| ||||    
T  23693191 tttctaacaagaaaaacataaggtgttggaactgttaaaatccaaccaagttcttgcaggataa 23693128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 160 - 223
Target Start/End: Complemental strand, 23711631 - 23711568
Alignment:
Q  160 tttctaacaaggaacacataaggtgttgtaactgttaaattccaatcaagtttttgcagtataa 223  Q
    ||||||||||| || ||||||||||||| |||||||||| ||||| |||||| |||||| ||||    
T  23711631 tttctaacaagaaaaacataaggtgttggaactgttaaaatccaaccaagttcttgcaggataa 23711568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 160 - 223
Target Start/End: Complemental strand, 23730087 - 23730024
Alignment:
Q  160 tttctaacaaggaacacataaggtgttgtaactgttaaattccaatcaagtttttgcagtataa 223  Q
    ||||||||||| || ||||||||||||| |||||||||| ||||| |||||| |||||| ||||    
T  23730087 tttctaacaagaaaaacataaggtgttggaactgttaaaatccaaccaagttcttgcaggataa 23730024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 160 - 223
Target Start/End: Complemental strand, 23748542 - 23748479
Alignment:
Q  160 tttctaacaaggaacacataaggtgttgtaactgttaaattccaatcaagtttttgcagtataa 223  Q
    ||||||||||| || ||||||||||||| |||||||||| ||||| |||||| |||||| ||||    
T  23748542 tttctaacaagaaaaacataaggtgttggaactgttaaaatccaaccaagttcttgcaggataa 23748479  T

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Target: chr3; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 160 - 223
Target Start/End: Complemental strand, 23689733 - 23689670
Alignment:
Q  160 tttctaacaaggaacacataaggtgttgtaactgttaaattccaatcaagtttttgcagtataa 223  Q
    ||||||||||| || ||||||||||||| ||| |||||| ||||| |||||| |||||| ||||    
T  23689733 tttctaacaagaaaaacataaggtgttggaaccgttaaaatccaaccaagttcttgcaggataa 23689670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 160 - 223
Target Start/End: Complemental strand, 24061970 - 24061907
Alignment:
Q  160 tttctaacaaggaacacataaggtgttgtaactgttaaattccaatcaagtttttgcagtataa 223  Q
    ||||||||||| || ||||||||||||| ||| |||||| ||||| |||||| |||||| ||||    
T  24061970 tttctaacaagaaaaacataaggtgttggaaccgttaaaatccaaccaagttcttgcaggataa 24061907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 160 - 215
Target Start/End: Original strand, 24116742 - 24116797
Alignment:
Q  160 tttctaacaaggaacacataaggtgttgtaactgttaaattccaatcaagtttttg 215  Q
    ||||||||||| || ||||||||||||| ||| |||||| ||||| ||||||||||    
T  24116742 tttctaacaagaaaaacataaggtgttggaaccgttaaaatccaaccaagtttttg 24116797  T

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