View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4681_high_65 (Length: 227)
Name: NF4681_high_65
Description: NF4681
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4681_high_65 |
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| [»] chr3 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 197; Significance: 1e-107; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 19 - 227
Target Start/End: Original strand, 43139995 - 43140203
Alignment:
| Q |
19 |
cacaccgcaatgatattcggttttcatcgctctaacccaaaacttcttaaggttagaaacaatcacattagagagaatgataagtctaaattggttgacc |
118 |
Q |
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| T |
43139995 |
cacaccgcaatgatattcggttttcatcgctctaacccaaaacttcttaaggttagaaacaatcacattagagagagtgatgagtctaaattggttgacc |
43140094 |
T |
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| Q |
119 |
atactcgaatcatcaatcatcacacttatgaataagagtaatatacgagtattgtttacatcatcaatatgattctgatcaaggaagtaattaatcatca |
218 |
Q |
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| T |
43140095 |
atactcgaatcatcaatcatcacacttatgaataagagtaatatacgagtattgtttacatcatcaatatgattctgatcaaggaagtaattaatcatta |
43140194 |
T |
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| Q |
219 |
atatgattc |
227 |
Q |
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| T |
43140195 |
atatgattc |
43140203 |
T |
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Target: chr3; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 135 - 183
Target Start/End: Original strand, 43140204 - 43140252
Alignment:
| Q |
135 |
tcatcacacttatgaataagagtaatatacgagtattgtttacatcatc |
183 |
Q |
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| T |
43140204 |
tcatcacacttatgaataagagtaatatacgagtattgcttacatcatc |
43140252 |
T |
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