View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4681_high_66 (Length: 226)
Name: NF4681_high_66
Description: NF4681
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4681_high_66 |
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Alignment Details
Target: chr1 (Bit Score: 185; Significance: 1e-100; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 1 - 214
Target Start/End: Complemental strand, 3702864 - 3702651
Alignment:
| Q |
1 |
aacaatgatcaaaatacaacaaataacacaaagttcttaatcttataagtttaaagnnnnnnngtgcctgctaaaccatgacgcaaaagattatgagcaa |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||| |
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| T |
3702864 |
aacaatgatcaaaatacaacaaataacacaaagttcttaatcttataagtttaaagaaaagaagtgcctgctaaaccatgatgcaaaagattatgagcaa |
3702765 |
T |
|
| Q |
101 |
tagcatctctagccttcaatgaattaactgatctcaaactaacttcaggaaccatttcatcatcaacaatatcaaccataagttcaggatccattttctc |
200 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3702764 |
tagcatctctagccttcaatgaattaactgatctcaaactaacttcaggaaccatttcatcatcaacaatatcaaccataagttcaggatccattttctc |
3702665 |
T |
|
| Q |
201 |
gcctttcatctcac |
214 |
Q |
| |
|
||||||||||||| |
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|
| T |
3702664 |
acctttcatctcac |
3702651 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 177; E-Value: 1e-95
Query Start/End: Original strand, 1 - 214
Target Start/End: Complemental strand, 3699176 - 3698963
Alignment:
| Q |
1 |
aacaatgatcaaaatacaacaaataacacaaagttcttaatcttataagtttaaagnnnnnnngtgcctgctaaaccatgacgcaaaagattatgagcaa |
100 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||| ||||||||| |||||||||||||||||| |||||||||||||||||| |
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| T |
3699176 |
aacaatgatcaaaatacaacaaattacacaaagttcttaatcttatgagtttaaagaaaagaagtgcctgctaaaccatgatgcaaaagattatgagcaa |
3699077 |
T |
|
| Q |
101 |
tagcatctctagccttcaatgaattaactgatctcaaactaacttcaggaaccatttcatcatcaacaatatcaaccataagttcaggatccattttctc |
200 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
3699076 |
tagcatctctagccttcaatgaattaactgatctcaaactaacttcaggaaccatttcatcatcaacaatatcaaccataagttcaggatccattttctc |
3698977 |
T |
|
| Q |
201 |
gcctttcatctcac |
214 |
Q |
| |
|
||||||||||||| |
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| T |
3698976 |
acctttcatctcac |
3698963 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 145 - 200
Target Start/End: Complemental strand, 39718924 - 39718869
Alignment:
| Q |
145 |
tcaggaaccatttcatcatcaacaatatcaaccataagttcaggatccattttctc |
200 |
Q |
| |
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||||||| |||||||||||| | || ||||| | |||||||||||||||||||||| |
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| T |
39718924 |
tcaggaagcatttcatcatccaaaacatcaatcttaagttcaggatccattttctc |
39718869 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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