View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4681_high_70 (Length: 206)
Name: NF4681_high_70
Description: NF4681
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4681_high_70 |
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Alignment Details
Target: chr6 (Bit Score: 102; Significance: 7e-51; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 102; E-Value: 7e-51
Query Start/End: Original strand, 47 - 196
Target Start/End: Original strand, 10501787 - 10501936
Alignment:
| Q |
47 |
atcaaagctagaaagattaaattgcaaaatagaagaaggcatgaaccatattacaatatataaacatgccaattatgaccacactcaactaaaacaaaac |
146 |
Q |
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| T |
10501787 |
atcaaagctagaaaaattaaattgcaaaacaggagaaggcatgaaacatattacaacatataagcagaccaattatgaccaaactcaactaaaacaaaac |
10501886 |
T |
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| Q |
147 |
ctaactcaaataaaatatacgcaaagaagcaaatcaactagctagaataa |
196 |
Q |
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| T |
10501887 |
ctgactcaaacaacatatacgcaaagaagcaaatcaactagctagaataa |
10501936 |
T |
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Target: chr4 (Bit Score: 53; Significance: 1e-21; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 47 - 143
Target Start/End: Original strand, 12066994 - 12067090
Alignment:
| Q |
47 |
atcaaagctagaaagattaaattgcaaaatagaagaaggcatgaaccatattacaatatataaacatgccaattatgaccacactcaactaaaacaa |
143 |
Q |
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|||||||||||||| |||||||| |||| ||||| ||||||||||| |||||||| |||||| || ||||| |||||||| ||||||||||||||| |
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| T |
12066994 |
atcaaagctagaaaaattaaattacaaagcagaagtaggcatgaaccttattacaacatataagcaggccaactatgaccaaactcaactaaaacaa |
12067090 |
T |
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