View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4681_low_1 (Length: 782)

Name: NF4681_low_1
Description: NF4681
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4681_low_1
NF4681_low_1
[»] chr1 (13 HSPs)
chr1 (19-769)||(6521747-6522495)
chr1 (351-614)||(6516870-6517133)
chr1 (355-614)||(6512475-6512734)
chr1 (355-596)||(6506562-6506809)
chr1 (676-769)||(47778065-47778158)
chr1 (684-769)||(6506903-6506988)
chr1 (676-769)||(47788187-47788280)
chr1 (249-312)||(6506438-6506501)
chr1 (375-449)||(47778382-47778456)
chr1 (375-529)||(47788424-47788578)
chr1 (489-529)||(47759914-47759954)
chr1 (701-768)||(6517220-6517287)
chr1 (680-769)||(47781973-47782062)
[»] scaffold0341 (6 HSPs)
scaffold0341 (355-596)||(587-834)
scaffold0341 (355-596)||(8240-8487)
scaffold0341 (684-769)||(928-1013)
scaffold0341 (684-769)||(8581-8666)
scaffold0341 (249-312)||(463-526)
scaffold0341 (249-312)||(8116-8179)


Alignment Details
Target: chr1 (Bit Score: 697; Significance: 0; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 697; E-Value: 0
Query Start/End: Original strand, 19 - 769
Target Start/End: Complemental strand, 6522495 - 6521747
Alignment:
Q  19 taatatgcaatacatagtagtacattcaaattatttccttggctttccttgttcttaattgatcaaaaagatgataacaatgaacacaataaaatcatca 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  6522495 taatatgcaatacatagtagtacattcaaattatttccttggctttccttgttcttaattgatcaaaaagatgataacaatgaacacaataaaatcaaca 6522396  T
Q  119 tcaacaaaattacagggacgacatttcttgacgtgttgcccttatctgcaaaaaccagaattaacacatagtgagacattaaatatttaatatatcaaag 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||    
T  6522395 tcaacaaaattacagggacgacatttcttgacgtgttgcccttatctgcaaaaaccagaattaacaca--gtgagacattaaatatttaatatatcaaag 6522298  T
Q  219 atatagtaaaaacacatacaaaaaccaccataaataccttgagaggaagtattgttttgtgcaaacggaggaggagttgagaaagatggcactggcacag 318  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6522297 atatagtaaaaacacatacaaaaaccaccataaataccttgagaggaagtattgttttgtgcaaacggaggaggagttgagaaagatggcactggcacag 6522198  T
Q  319 gcaccggtgatggcgagggtgaatctgatggcgttggttgatagaagaatgaattggtttcatatctcaaattacaactgggtctaacaattctagcacc 418  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6522197 gcaccggtgatggcgagggtgaatctgatggcgttggttgatagaagaatgaattggtttcatatctcaaattacaactgggtctaacaattctagcacc 6522098  T
Q  419 taacctattgttacaacaatttgaaatttctttgatagattgaaccaaacaatcatcacataatgttttagacaaatcaggtgtgcattgaacaagacca 518  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6522097 taacctattgttacaacaatttgaaatttctttgatagattgaaccaaacaatcatcacataatgttttagacaaatcaggtgtgcattgaacaagacca 6521998  T
Q  519 tatatggtttggttattatttggaccaacctcatcacttcctacagcatatttaaggtcactgtcccctgatgcagctttatttcttaaactatccnnnn 618  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||        
T  6521997 tatatggtttggttattacttggaccaacctcatcacttcctacagcatatttaaggtcactgtcccctgatgcagctctatttcttaaactatccaaaa 6521898  T
Q  619 nnnnnttcaccactttgttaaactcaacctcatttgttgcgttgtttgtattccaaacaaaataagcaggtccaatttcgttgagaccaaatattgaacg 718  Q
         |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6521897 aaaaattcaccactttgttaaactcaacctcatttgttgcgttgtttgtattccaaacaaaataagcaggtccaatttcgttgagaccaaatattgaacg 6521798  T
Q  719 gtttgagtagcgcaacatgcattcttcatcgttgtaccatccaattgcttc 769  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  6521797 gtttgagtaacgcaacatgcattcttcatcgttgtaccatccaattgcttc 6521747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 180; E-Value: 9e-97
Query Start/End: Original strand, 351 - 614
Target Start/End: Original strand, 6516870 - 6517133
Alignment:
Q  351 gttggttgatagaagaatgaattggtttcatatctcaaattacaactgggtctaacaattctagcacctaacctattgttacaacaatttgaaatttctt 450  Q
    ||||||||||| |||| ||||| ||||||||||||||||| ||||||||||||||||| ||||||||  | ||| |||||||||||  |||  ||||| |    
T  6516870 gttggttgataaaagagtgaatcggtttcatatctcaaataacaactgggtctaacaactctagcactcatcctgttgttacaacatattgcgatttcat 6516969  T
Q  451 tgatagattgaaccaaacaatcatcacataatgttttagacaaatcaggtgtgcattgaacaagaccatatatggtttggttattatttggaccaacctc 550  Q
    |||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||| | ||||||||||||||||| ||||||||||||||||||||    
T  6516970 tgatagattgaaccaaacaatcatcacaaaatgttttaaacaaatcaggtgtgcattgagctagaccatatatggtttgattattatttggaccaacctc 6517069  T
Q  551 atcacttcctacagcatatttaaggtcactgtcccctgatgcagctttatttcttaaactatcc 614  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||    
T  6517070 atcacttcctacagcatatttaaggtcactgtcccctgatgcagctctatttcttaaattatcc 6517133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 156; E-Value: 2e-82
Query Start/End: Original strand, 355 - 614
Target Start/End: Original strand, 6512475 - 6512734
Alignment:
Q  355 gttgatagaagaatgaattggtttcatatctcaaattacaactgggtctaacaattctagcacctaacctattgttacaacaatttgaaatttctttgat 454  Q
    |||||||||||| ||||| ||||||||||||||||| |||||| |||||||||||||||||||| ||||| |||||||||||  |||  ||| |||||||    
T  6512475 gttgatagaagagtgaatcggtttcatatctcaaataacaacttggtctaacaattctagcacccaacctgttgttacaacatcttgggattgctttgat 6512574  T
Q  455 agattgaaccaaacaatcatcacataatgttttagacaaatcaggtgtgcattgaacaagaccatatatggtttggttattatttggaccaacctcatca 554  Q
    |||||  |||||||||||||| || |||| ||||||||||||||||||||||||||||||| ||||||| ||||| ||||||||| ||||||||||||||    
T  6512575 agattttaccaaacaatcatcgcacaatgatttagacaaatcaggtgtgcattgaacaagagcatatatagtttgattattattttgaccaacctcatca 6512674  T
Q  555 cttcctacagcatatttaaggtcactgtcccctgatgcagctttatttcttaaactatcc 614  Q
    ||||| |||||||||||||||||||| || ||||||| |||| ||||||||||| |||||    
T  6512675 cttccaacagcatatttaaggtcactatcacctgatgaagctctatttcttaaattatcc 6512734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 136; E-Value: 2e-70
Query Start/End: Original strand, 355 - 596
Target Start/End: Original strand, 6506562 - 6506809
Alignment:
Q  355 gttgatagaagaatgaattggtttcatatctcaaattacaactgggtctaacaattctagcaccta-acctatt-----gttacaacaatttgaaatttc 448  Q
    |||||||||| | ||||||||||||||||||||||| |||||||||||||| || |||| |||||| |||||||     || |||||||||||  |||||    
T  6506562 gttgatagaaaagtgaattggtttcatatctcaaataacaactgggtctaagaaatctaccacctatacctattctattgtcacaacaatttgggatttc 6506661  T
Q  449 tttgatagattgaaccaaacaatcatcacataatgttttagacaaatcaggtgtgcattgaacaagaccatatatggtttggttattatttggaccaacc 548  Q
    ||||||||||| | ||||||| |||||||| ||||||| |||||||||||||||||||||||||||| || |||||||||| |||||||||||||||| |    
T  6506662 tttgatagatttatccaaacattcatcacacaatgtttcagacaaatcaggtgtgcattgaacaagagcaaatatggtttgattattatttggaccaatc 6506761  T
Q  549 tcatcacttcctacagcatatttaaggtcactgtcccctgatgcagct 596  Q
     ||||||||||||||||||||||||||||||| ||||| |||||||||    
T  6506762 acatcacttcctacagcatatttaaggtcactttcccccgatgcagct 6506809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 676 - 769
Target Start/End: Complemental strand, 47778158 - 47778065
Alignment:
Q  676 caaaataagcaggtccaatttcgttgagaccaaatattgaacggtttgagtagcgcaacatgcattcttcatcgttgtaccatccaattgcttc 769  Q
    ||||||| |||||||||||||| ||||| | |||||||||||||| |||||| ||||||||||||| |||||| | |||||| |||||||||||    
T  47778158 caaaatatgcaggtccaatttcattgaggctaaatattgaacggtctgagtaacgcaacatgcatttttcatcctcgtaccaaccaattgcttc 47778065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 684 - 769
Target Start/End: Original strand, 6506903 - 6506988
Alignment:
Q  684 gcaggtccaatttcgttgagaccaaatattgaacggtttgagtagcgcaacatgcattcttcatcgttgtaccatccaattgcttc 769  Q
    |||||||| ||||| |||| |||||||||| |||||| |||| | ||||||||||||| |||||||| ||||||||||||||||||    
T  6506903 gcaggtcccatttcattgataccaaatattaaacggtgtgaggaacgcaacatgcatttttcatcgtcgtaccatccaattgcttc 6506988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 676 - 769
Target Start/End: Complemental strand, 47788280 - 47788187
Alignment:
Q  676 caaaataagcaggtccaatttcgttgagaccaaatattgaacggtttgagtagcgcaacatgcattcttcatcgttgtaccatccaattgcttc 769  Q
    ||||||||||||||||||||||||| ||||| | ||||||||||| ||| || || ||||| ||||  ||||| | ||||||||||||||||||    
T  47788280 caaaataagcaggtccaatttcgtttagacccattattgaacggtctgaataacgtaacatacatttctcatcctcgtaccatccaattgcttc 47788187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 249 - 312
Target Start/End: Original strand, 6506438 - 6506501
Alignment:
Q  249 taaataccttgagaggaagtattgttttgtgcaaacggaggaggagttgagaaagatggcactg 312  Q
    ||||||||| ||||||||||| |||||| |||||| |||||||||| |||||| ||||||||||    
T  6506438 taaatacctggagaggaagtagtgttttctgcaaatggaggaggagctgagaatgatggcactg 6506501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 375 - 449
Target Start/End: Complemental strand, 47778456 - 47778382
Alignment:
Q  375 gtttcatatctcaaattacaactgggtctaacaattctagcacctaacctattgttacaacaatttgaaatttct 449  Q
    |||||| | ||||||||||| || |||||||||||||||||||| | |||||| ||||||||  |||||||||||    
T  47778456 gtttcaaacctcaaattacagctaggtctaacaattctagcaccaatcctatttttacaacatcttgaaatttct 47778382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 375 - 529
Target Start/End: Complemental strand, 47788578 - 47788424
Alignment:
Q  375 gtttcatatctcaaattacaactgggtctaacaattctagcacctaacctattgttacaacaatttgaaatttctttgatagattgaaccaaacaatcat 474  Q
    |||||| | ||||||||||| || ||||||| |||||||||||| | ||||||| |||||||  |||||| |||    || ||||||| |||||||||||    
T  47788578 gtttcaaacctcaaattacagcttggtctaataattctagcaccaatcctattgctacaacatcttgaaacttcagcaatggattgaagcaaacaatcat 47788479  T
Q  475 cacataatgttttagacaaatcaggtgtgcattgaacaagaccatatatggtttg 529  Q
    ||||   ||    |||||| ||||| || || ||||||||||||||||| |||||    
T  47788478 cacactgtggaccagacaagtcaggagtacactgaacaagaccatatattgtttg 47788424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 489 - 529
Target Start/End: Original strand, 47759914 - 47759954
Alignment:
Q  489 gacaaatcaggtgtgcattgaacaagaccatatatggtttg 529  Q
    ||||||||||||||||| |||||||||||||||||||||||    
T  47759914 gacaaatcaggtgtgcactgaacaagaccatatatggtttg 47759954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 701 - 768
Target Start/End: Original strand, 6517220 - 6517287
Alignment:
Q  701 gagaccaaatattgaacggtttgagtagcgcaacatgcattcttcatcgttgtaccatccaattgctt 768  Q
    ||||||||||||||||||| ||||||| ||||||||||||   ||||| | |||||| ||||||||||    
T  6517220 gagaccaaatattgaacggcttgagtaacgcaacatgcatctatcatcatcgtaccaaccaattgctt 6517287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 680 - 769
Target Start/End: Complemental strand, 47782062 - 47781973
Alignment:
Q  680 ataagcaggtccaatttcgttgagaccaaatattgaacggtttgagtagcgcaacatgcattcttcatcgttgtaccatccaattgcttc 769  Q
    |||||| || ||||||||||| || || ||||| ||||||| ||| || || ||||||||||  ||||| | ||||||||||||||||||    
T  47782062 ataagctggcccaatttcgtttaggcctaatatagaacggtctgaataacgtaacatgcatttctcatcctcgtaccatccaattgcttc 47781973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0341 (Bit Score: 136; Significance: 2e-70; HSPs: 6)
Name: scaffold0341
Description:

Target: scaffold0341; HSP #1
Raw Score: 136; E-Value: 2e-70
Query Start/End: Original strand, 355 - 596
Target Start/End: Original strand, 587 - 834
Alignment:
Q  355 gttgatagaagaatgaattggtttcatatctcaaattacaactgggtctaacaattctagcaccta-acctatt-----gttacaacaatttgaaatttc 448  Q
    |||||||||| | ||||||||||||||||||||||| |||||||||||||| || |||| |||||| |||||||     || |||||||||||  |||||    
T  587 gttgatagaaaagtgaattggtttcatatctcaaataacaactgggtctaagaaatctaccacctatacctattctattgtcacaacaatttgggatttc 686  T
Q  449 tttgatagattgaaccaaacaatcatcacataatgttttagacaaatcaggtgtgcattgaacaagaccatatatggtttggttattatttggaccaacc 548  Q
    ||||||||||| | ||||||| |||||||| ||||||| |||||||||||||||||||||||||||| || |||||||||| |||||||||||||||| |    
T  687 tttgatagatttatccaaacattcatcacacaatgtttcagacaaatcaggtgtgcattgaacaagagcaaatatggtttgattattatttggaccaatc 786  T
Q  549 tcatcacttcctacagcatatttaaggtcactgtcccctgatgcagct 596  Q
     ||||||||||||||||||||||||||||||| ||||| |||||||||    
T  787 acatcacttcctacagcatatttaaggtcactttcccccgatgcagct 834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0341; HSP #2
Raw Score: 136; E-Value: 2e-70
Query Start/End: Original strand, 355 - 596
Target Start/End: Original strand, 8240 - 8487
Alignment:
Q  355 gttgatagaagaatgaattggtttcatatctcaaattacaactgggtctaacaattctagcaccta-acctatt-----gttacaacaatttgaaatttc 448  Q
    |||||||||| | ||||||||||||||||||||||| |||||||||||||| || |||| |||||| |||||||     || |||||||||||  |||||    
T  8240 gttgatagaaaagtgaattggtttcatatctcaaataacaactgggtctaagaaatctaccacctatacctattctattgtcacaacaatttgggatttc 8339  T
Q  449 tttgatagattgaaccaaacaatcatcacataatgttttagacaaatcaggtgtgcattgaacaagaccatatatggtttggttattatttggaccaacc 548  Q
    ||||||||||| | ||||||| |||||||| ||||||| |||||||||||||||||||||||||||| || |||||||||| |||||||||||||||| |    
T  8340 tttgatagatttatccaaacattcatcacacaatgtttcagacaaatcaggtgtgcattgaacaagagcaaatatggtttgattattatttggaccaatc 8439  T
Q  549 tcatcacttcctacagcatatttaaggtcactgtcccctgatgcagct 596  Q
     ||||||||||||||||||||||||||||||| ||||| |||||||||    
T  8440 acatcacttcctacagcatatttaaggtcactttcccccgatgcagct 8487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0341; HSP #3
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 684 - 769
Target Start/End: Original strand, 928 - 1013
Alignment:
Q  684 gcaggtccaatttcgttgagaccaaatattgaacggtttgagtagcgcaacatgcattcttcatcgttgtaccatccaattgcttc 769  Q
    |||||||| ||||| |||| |||||||||| |||||| |||| | ||||||||||||| |||||||| ||||||||||||||||||    
T  928 gcaggtcccatttcattgataccaaatattaaacggtgtgaggaacgcaacatgcatttttcatcgtcgtaccatccaattgcttc 1013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0341; HSP #4
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 684 - 769
Target Start/End: Original strand, 8581 - 8666
Alignment:
Q  684 gcaggtccaatttcgttgagaccaaatattgaacggtttgagtagcgcaacatgcattcttcatcgttgtaccatccaattgcttc 769  Q
    |||||||| ||||| |||| |||||||||| |||||| |||| | ||||||||||||| |||||||| ||||||||||||||||||    
T  8581 gcaggtcccatttcattgataccaaatattaaacggtgtgaggaacgcaacatgcatttttcatcgtcgtaccatccaattgcttc 8666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0341; HSP #5
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 249 - 312
Target Start/End: Original strand, 463 - 526
Alignment:
Q  249 taaataccttgagaggaagtattgttttgtgcaaacggaggaggagttgagaaagatggcactg 312  Q
    ||||||||| ||||||||||| |||||| |||||| |||||||||| |||||| ||||||||||    
T  463 taaatacctggagaggaagtagtgttttctgcaaatggaggaggagctgagaatgatggcactg 526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0341; HSP #6
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 249 - 312
Target Start/End: Original strand, 8116 - 8179
Alignment:
Q  249 taaataccttgagaggaagtattgttttgtgcaaacggaggaggagttgagaaagatggcactg 312  Q
    ||||||||| ||||||||||| |||||| |||||| |||||||||| |||||| ||||||||||    
T  8116 taaatacctggagaggaagtagtgttttctgcaaatggaggaggagctgagaatgatggcactg 8179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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