View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4681_low_17 (Length: 408)

Name: NF4681_low_17
Description: NF4681
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4681_low_17
NF4681_low_17
[»] chr4 (6 HSPs)
chr4 (1-408)||(48911989-48912396)
chr4 (23-400)||(48958294-48958671)
chr4 (25-345)||(48965478-48965798)
chr4 (209-402)||(48962627-48962820)
chr4 (5-147)||(48961425-48961567)
chr4 (41-369)||(48951399-48951727)
[»] scaffold0536 (2 HSPs)
scaffold0536 (1-408)||(6155-6562)
scaffold0536 (1-408)||(10139-10544)
[»] chr6 (2 HSPs)
chr6 (39-402)||(12589819-12590182)
chr6 (39-353)||(12483163-12483477)
[»] chr2 (4 HSPs)
chr2 (39-401)||(13440363-13440725)
chr2 (25-400)||(13448512-13448887)
chr2 (196-400)||(13455154-13455358)
chr2 (42-129)||(13455000-13455087)
[»] chr5 (2 HSPs)
chr5 (25-405)||(28385483-28385863)
chr5 (39-405)||(12540848-12541214)
[»] chr7 (1 HSPs)
chr7 (25-281)||(3417301-3417557)
[»] chr8 (1 HSPs)
chr8 (39-405)||(12641128-12641494)


Alignment Details
Target: chr4 (Bit Score: 372; Significance: 0; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 372; E-Value: 0
Query Start/End: Original strand, 1 - 408
Target Start/End: Complemental strand, 48912396 - 48911989
Alignment:
Q  1 ccaacccttaataatcatagccttcttctttccgataattctctcttcaaacccctttggcaaccatttttctttctcctcttcattgtcatgctccgtc 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  48912396 ccaacccttaataatcatagccttcttctttccgataattctctcttcaaacccctttggcaaccatttttctttctcctcttcattgtcattctccgtc 48912297  T
Q  101 cgtttcttttcaggaacaacccatatgaattcgtgactcgatgcttcaatcccgcacgcaatctcataaagttgtttatccgaaaaatgacatcggcttc 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  48912296 cgtttcttttcaggaacaacccatatgaattcgtgactcgatgcttcaatcccgcacgcaatctcataaagttgtttatccgaaaaatgacattggcttc 48912197  T
Q  201 caaagcatatgtacaccaccgagttatcttgtttcgagttaagccaactcaaacactcgtgcacactcacaacaccctcgtctcctctctgtgctttcgc 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||  || ||| |    
T  48912196 caaagcatatgtacaccaccgagttatcttgtttcgagttaagccaactcaaacactcgtgcacactcacaacactctcttctcctctctcagccttctc 48912097  T
Q  301 ttgaatagttgtgcgaataagagaagctggaccaagatgccaagctttgtgacaagtagttttctcgtagtgttcgatatactcttcaccgtcaagttca 400  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48912096 ttgaatagttctgcgaataagagaagctggaccaagatgccaagctttgtgacaagtagttttctcgtagtgttcgatatactcttcaccgtcaagttca 48911997  T
Q  401 gcaaaatt 408  Q
    ||||||||    
T  48911996 gcaaaatt 48911989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 23 - 400
Target Start/End: Original strand, 48958294 - 48958671
Alignment:
Q  23 ttcttctttccgataattctctcttcaaacccctttggcaaccatttttctttctcctcttcattgtcatgctccgtccgtttcttttcaggaacaaccc 122  Q
    ||||||||||| ||  |||||||||| || || || |||||||| ||| |||||||||||||| | || |  ||  ||| |||||| |||||||||||||    
T  48958294 ttcttctttccaatgtttctctcttcgaatcctttcggcaaccactttcctttctcctcttcactctcgtcttctttccctttcttctcaggaacaaccc 48958393  T
Q  123 atatgaattcgtgactcgatgcttcaatcccgcacgcaatctcataaagttgtttatccgaaaaatgacatcggcttccaaagcatatgtacaccaccga 222  Q
    |||  ||||||||||  |||||||| ||||| |||||||||||||||||||||||||| || |||| ||||  |||||||||||||||||||| ||| ||    
T  48958394 atacaaattcgtgacctgatgcttctatcccacacgcaatctcataaagttgtttatcagataaataacatatgcttccaaagcatatgtacaacactga 48958493  T
Q  223 gttatcttgtttcgagttaagccaactcaaacactcgtgcacactcacaacaccctcgtctcctctctgtgctttcgcttgaatagttgtgcgaataaga 322  Q
    ||||| |   ||| |||| |||||||||| |||  | |||||||| ||||||  ||| | ||| |||| || |||| ||||||| |||  ||||||||||    
T  48958494 gttatgtctcttcaagttgagccaactcagacaaccatgcacactaacaacattctcatttcccctctctgatttctcttgaatggtttggcgaataaga 48958593  T
Q  323 gaagctggaccaagatgccaagctttgtgacaagtagttttctcgtagtgttcgatatactcttcaccgtcaagttca 400  Q
    ||||| ||||||||||||||| | |||||||  ||  |||||| ||||||||||||  |||||||||| |||||||||    
T  48958594 gaagcaggaccaagatgccaaaccttgtgacccgtgattttcttgtagtgttcgatgcactcttcaccatcaagttca 48958671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 25 - 345
Target Start/End: Original strand, 48965478 - 48965798
Alignment:
Q  25 cttctttccgataattctctcttcaaacccctttggcaaccatttttctttctcctcttcattgtcatgctccgtccgtttcttttcaggaacaacccat 124  Q
    ||||||||| ||  |||||||||| || |||||||| ||||| ||||  |||||||||||| | |||| |||  |||  || ||    |||| |||||||    
T  48965478 cttctttccaatgtttctctcttcgaatccctttggtaaccacttttgcttctcctcttcactctcatcctctttcccgttattaaggggaataacccat 48965577  T
Q  125 atgaattcgtgactcgatgcttcaatcccgcacgcaatctcataaagttgtttatccgaaaaatgacatcggcttccaaagcatatgtacaccaccgagt 224  Q
    || || || |||| ||||||||| ||  | ||||||||||||||||| |||||||||  | || ||||  |||||||||||| |||||||| ||| ||||    
T  48965578 ataaaatcatgacccgatgcttctattgcacacgcaatctcataaagctgtttatcctgataacgacagaggcttccaaagcttatgtacaacactgagt 48965677  T
Q  225 tatcttgtttcgagttaagccaactcaaacactcgtgcacactcacaacaccctcgtctcctctctgtgctttcgcttgaatagttgtgcgaataagaga 324  Q
    ||| | | || || || ||||||||||||||||| ||||| |||||  ||| ||| | ||| |||| ||||||| |||||| |||| | |||||||||||    
T  48965678 tatgtcgcttggaattgagccaactcaaacactcttgcacgctcactgcactctcttgtcccctctctgctttctcttgaacagttttacgaataagaga 48965777  T
Q  325 agctggaccaagatgccaagc 345  Q
    |||||||||||||||||||||    
T  48965778 agctggaccaagatgccaagc 48965798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 209 - 402
Target Start/End: Original strand, 48962627 - 48962820
Alignment:
Q  209 atgtacaccaccgagttatcttgtttcgagttaagccaactcaaacactcgtgcacactcacaacaccctcgtctcctctctgtgctttcgcttgaatag 308  Q
    ||||||| ||| ||||||| | | || || |||||||| | || |||||| || || | |||||||| ||| | ||| || | ||||||| ||||||  |    
T  48962627 atgtacaacactgagttatgtcgctttgaattaagccaccacagacactcttgtacgcccacaacactctcatgtcccctttctgctttctcttgaacgg 48962726  T
Q  309 ttgtgcgaataagagaagctggaccaagatgccaagctttgtgacaagtagttttctcgtagtgttcgatatactcttcaccgtcaagttcagc 402  Q
     | |||||||||||||| ||||||| ||||||||||| |||||||  || ||||||||||||||||||||  ||||||||||||||||||||||    
T  48962727 atttgcgaataagagaaactggaccgagatgccaagccttgtgacccgtggttttctcgtagtgttcgatgcactcttcaccgtcaagttcagc 48962820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 5 - 147
Target Start/End: Original strand, 48961425 - 48961567
Alignment:
Q  5 cccttaataatcatagccttcttctttccgataattctctcttcaaacccctttggcaaccatttttctttctcctcttcattgtcatgctccgtccgtt 104  Q
    |||||||| |||| | ||||||||||| | ||  ||||||||||||| || || |||||||| || ||||||||||||||  | |||| | |  ||| ||    
T  48961425 cccttaatgatcaaacccttcttcttttcaatgtttctctcttcaaatcctttcggcaaccacttgtctttctcctcttcgctctcatccactttccctt 48961524  T
Q  105 tcttttcaggaacaacccatatgaattcgtgactcgatgcttc 147  Q
    | || ||||||||||||||||  |||||||||| |||||||||    
T  48961525 ttttctcaggaacaacccatacaaattcgtgacccgatgcttc 48961567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 41 - 369
Target Start/End: Original strand, 48951399 - 48951727
Alignment:
Q  41 ctctcttcaaacccctttggcaaccatttttctttctcctcttcattgtcatgctccgtccgtttcttttcaggaacaacccatatgaattcgtgactcg 140  Q
    |||||||||||| || | || ||||||||||| |||||||| ||| | || | |||| |||  |||||||| || ||||||||||||||||| | ||  |    
T  48951399 ctctcttcaaactccctgggtaaccatttttccttctcctcatcactctcgttctccttccccttcttttctgggacaacccatatgaattcataacctg 48951498  T
Q  141 atgcttcaatcccgcacgcaatctcataaagttgtttatccgaaaaatgacatcggcttccaaagcatatgtacaccaccgagttatcttgtttcgagtt 240  Q
    || |||| ||| |||  ||||||||||| | ||| ||||| |  || | |||     |||||||||  ||||| | ||| ||||||||||| ||||||||    
T  48951499 attcttctatcgcgcttgcaatctcatacaattgcttatctgggaagtaacaaattgttccaaagctaatgtaaagcactgagttatcttgcttcgagtt 48951598  T
Q  241 aagccaactcaaacactcgtgcacactcacaacaccctcgtctcctctctgtgctttcgcttgaatagttgtgcgaataagagaagctggaccaagatgc 340  Q
     | |||| ||||| |||  ||||| ||||   | |  ||  ||||||| | ||| ||| ||||| ||||| |||||| |||||| || ||||||||||||    
T  48951599 caaccaattcaaatacttttgcacgctcatttcgctttcccctcctctatttgccttctcttgagtagttttgcgaacaagagaggccggaccaagatgc 48951698  T
Q  341 caagctttgtgacaagtagttttctcgta 369  Q
    ||||| |||||||   | |||||||||||    
T  48951699 caagccttgtgaccgatggttttctcgta 48951727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0536 (Bit Score: 204; Significance: 1e-111; HSPs: 2)
Name: scaffold0536
Description:

Target: scaffold0536; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 1 - 408
Target Start/End: Complemental strand, 6562 - 6155
Alignment:
Q  1 ccaacccttaataatcatagccttcttctttccgataattctctcttcaaacccctttggcaaccatttttctttctcctcttcattgtcatgctccgtc 100  Q
    ||||||| ||||||||| | ||||||||||||||||| |||||||||| || |||||||||||||||||| |||||||||||||| | ||||  ||  ||    
T  6562 ccaacccctaataatcaaacccttcttctttccgatatttctctcttcgaatccctttggcaaccattttcctttctcctcttcactctcatcttctttc 6463  T
Q  101 cgtttcttttcaggaacaacccatatgaattcgtgactcgatgcttcaatcccgcacgcaatctcataaagttgtttatccgaaaaatgacatcggcttc 200  Q
    | |||||| |||||||||||||||||||||| ||||| ||||||||| ||||| || |||||||| ||||||||||||||||  ||| | |||  |||||    
T  6462 cctttcttctcaggaacaacccatatgaatttgtgacccgatgcttctatcccacatgcaatctcgtaaagttgtttatccgggaaaaggcataagcttc 6363  T
Q  201 caaagcatatgtacaccaccgagttatcttgtttcgagttaagccaactcaaacactcgtgcacactcacaacaccctcgtctcctctctgtgctttcgc 300  Q
    ||||||||||||||| ||| ||||||||| | |||||||  |||||||||| |||||| ||||||||||||||||  |  | ||| |||||||||||  |    
T  6362 caaagcatatgtacaacactgagttatctggcttcgagtctagccaactcagacactcatgcacactcacaacactttgttgtcccctctgtgctttttc 6263  T
Q  301 ttgaatagttgtgcgaataagagaagctggaccaagatgccaagctttgtgacaagtagttttctcgtagtgttcgatatactcttcaccgtcaagttca 400  Q
    ||||| |||| | |||||||||||||| |||||||||||||||||||||||||  ||||||||||||||||||||||| |||||||||||||||||||||    
T  6262 ttgaacagttctacgaataagagaagccggaccaagatgccaagctttgtgacctgtagttttctcgtagtgttcgatgtactcttcaccgtcaagttca 6163  T
Q  401 gcaaaatt 408  Q
    | ||||||    
T  6162 gaaaaatt 6155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0536; HSP #2
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 1 - 408
Target Start/End: Complemental strand, 10544 - 10139
Alignment:
Q  1 ccaacccttaataatcatagccttcttctttccgataattctctcttcaaacccctttggcaaccatttttctttctcctcttcattgtcatgctccgtc 100  Q
    ||||||||||||||||| | ||||||||||| | |||| ||| |||||||| || || || | |||||||||||||||||||| | | |||| |||  ||    
T  10544 ccaacccttaataatcaaacccttcttctttgcaataactctttcttcaaatcctttcggtagccatttttctttctcctcttgactctcattctctttc 10445  T
Q  101 cgtttcttttcaggaacaacccatatgaattcgtgactcgatgcttcaatcccgcacgcaatctcataaagttgtttatccgaaaaatgacatcggcttc 200  Q
    | |||||| ||||||||||| ||||  ||||||| || ||||||||| | || ||||||||||||||||||||||||||| ||||||| |||| ||||||    
T  10444 cctttcttctcaggaacaactcatacaaattcgtaacccgatgcttctaccctgcacgcaatctcataaagttgtttatctgaaaaataacataggcttc 10345  T
Q  201 caaagcatatgtacaccaccgagttatcttgtttcgagttaagccaactcaaacactcgtgcacactcacaacaccctcgtctcctctctgtgctttcgc 300  Q
    ||||||| ||||||| ||| ||  ||||| | ||| ||||||||||||||| |||||| |||||||||||||||| ||  |||||||||| || |||| |    
T  10344 caaagcaaatgtacaacactga--tatctcgcttcaagttaagccaactcagacactcatgcacactcacaacactctgttctcctctctctgttttctc 10247  T
Q  301 ttgaatagttgtgcgaataagagaagctggaccaagatgccaagctttgtgacaagtagttttctcgtagtgttcgatatactcttcaccgtcaagttca 400  Q
    ||||| |||| | |||| |||| ||||||||| ||||||||||||||| ||||  |||||||||| |||||||||||| | || || ||||||||||||     
T  10246 ttgaacagttctacgaacaagataagctggactaagatgccaagctttctgacccgtagttttcttgtagtgttcgatgtgctatttaccgtcaagttct 10147  T
Q  401 gcaaaatt 408  Q
     |||||||    
T  10146 acaaaatt 10139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 116; Significance: 7e-59; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 116; E-Value: 7e-59
Query Start/End: Original strand, 39 - 402
Target Start/End: Complemental strand, 12590182 - 12589819
Alignment:
Q  39 ttctctcttcaaacccctttggcaaccatttttctttctcctcttcattgtcatgctccgtccgtttcttttcaggaacaacccatatgaattcgtgact 138  Q
    ||||||||||||| ||  | ||||||||||||| ||| ||||| ||| | ||||  ||| ||| ||| || || |||| |||||||| ||||||||| |     
T  12590182 ttctctcttcaaatccactaggcaaccatttttgtttatcctcatcactctcatcttccttcccttttttctcgggaataacccatacgaattcgtggcc 12590083  T
Q  139 cgatgcttcaatcccgcacgcaatctcataaagttgtttatccgaaaaatgacatcggcttccaaagcatatgtacaccaccgagttatcttgtttcgag 238  Q
     |||||||| || || |||| ||||||||||||||||||||| || ||||  |||  ||| |||||||||||||||| ||| ||||||||| | ||||||    
T  12590082 tgatgcttctatgccacacgaaatctcataaagttgtttatctgagaaatagcatatgctcccaaagcatatgtacaacacagagttatctcgcttcgag 12589983  T
Q  239 ttaagccaactcaaacactcgtgcacactcacaacaccctcgtctcctctctgtgctttcgcttgaatagttgtgcgaataagagaagctggaccaagat 338  Q
    || |||||||||| |||||| |||||  ||||||||| ||| | ||| || | ||||||| |||||| |||| || ||||||||||||||||||||||||    
T  12589982 tttagccaactcagacactcttgcacgttcacaacactctcatttcccctatctgctttctcttgaacagttttgtgaataagagaagctggaccaagat 12589883  T
Q  339 gccaagctttgtgacaagtagttttctcgtagtgttcgatatactcttcaccgtcaagttcagc 402  Q
    ||||||| |||||||  || |||||||| ||||||| || | ||||||  || |||||||||||    
T  12589882 gccaagccttgtgacctgtggttttctcatagtgtttgacacactcttggccatcaagttcagc 12589819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 39 - 353
Target Start/End: Complemental strand, 12483477 - 12483163
Alignment:
Q  39 ttctctcttcaaacccctttggcaaccatttttctttctcctcttcattgtcatgctccgtccgtttcttttcaggaacaacccatatgaattcgtgact 138  Q
    ||||||| ||||| ||||| |||||||| |||||||||||||| ||  | ||||  ||| ||| ||| || ||||||||||||||||||||||  | ||     
T  12483477 ttctctcctcaaatcccttcggcaaccacttttctttctcctcatcgctctcatcttccttcccttttttctcaggaacaacccatatgaattttttacc 12483378  T
Q  139 cgatgcttcaatcccgcacgcaatctcataaagttgtttatccgaaaaatgacatcggcttccaaagcatatgtacaccaccgagttatcttgtttcgag 238  Q
    ||||||||| || ||||| | ||| || ||||| |||||||| || ||||  ||| |||| |||||||||||||||| ||| || || ||||| || |||    
T  12483377 cgatgcttctattccgcatgaaatttcgtaaagctgtttatcagagaaattgcataggctcccaaagcatatgtacaacactgaattttcttgctttgag 12483278  T
Q  239 ttaagccaactcaaacactcgtgcacactcacaacaccctcgtctcctctctgtgctttcgcttgaatagttgtgcgaataagagaagctggaccaagat 338  Q
    || ||||||||   |||||| ||||| |||||||||| ||||| ||| |||| ||| ||  |||||| ||||   | |||||| |||  |||||| | ||    
T  12483277 tttagccaactttgacactcatgcacgctcacaacactctcgtttcccctctctgccttttcttgaacagtttcacaaataagtgaatgtggacctaaat 12483178  T
Q  339 gccaagctttgtgac 353  Q
    ||||||| |||||||    
T  12483177 gccaagccttgtgac 12483163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 99; Significance: 1e-48; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 39 - 401
Target Start/End: Original strand, 13440363 - 13440725
Alignment:
Q  39 ttctctcttcaaacccctttggcaaccatttttctttctcctcttcattgtcatgctccgtccgtttcttttcaggaacaacccatatgaattcgtgact 138  Q
    |||||||||| || |||||||||||||| ||||||||||| || ||| | ||||  ||  ||| |||||| |||||||||||||||||||||  ||||||    
T  13440363 ttctctcttcgaatccctttggcaaccacttttctttctcttcctcactctcatcttctttccctttcttctcaggaacaacccatatgaatgggtgact 13440462  T
Q  139 cgatgcttcaatcccgcacgcaatctcataaagttgtttatccgaaaaatgacatcggcttccaaagcatatgtacaccaccgagttatcttgtttcgag 238  Q
     |||||||| ||  ||||||| |||||||| ||||||||||| || ||||       ||||||||| |||||||||| |||||||||| |||  |  |||    
T  13440463 agatgcttctattgcgcacgccatctcatatagttgtttatcagagaaatagttgatgcttccaaaacatatgtacaacaccgagttaactttctctgag 13440562  T
Q  239 ttaagccaactcaaacactcgtgcacactcacaacaccctcgtctcctctctgtgctttcgcttgaatagttgtgcgaataagagaagctggaccaagat 338  Q
    |  ||||||||||  || |||||||   ||||| ||||||| | ||| |||| ||||||| ||||||| ||| | ||||||||||||| |||||| ||||    
T  13440563 tcgagccaactcatgcattcgtgcatgttcacatcaccctcctttcccctctctgctttctcttgaatggttttacgaataagagaagttggaccgagat 13440662  T
Q  339 gccaagctttgtgacaagtagttttctcgtagtgttcgatatactcttcaccgtcaagttcag 401  Q
    ||||| | |||||||  || |||||||| ||||||| |||  ||||||| |||||||||||||    
T  13440663 gccaaaccttgtgacccgtggttttctcatagtgttggatgcactcttctccgtcaagttcag 13440725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 25 - 400
Target Start/End: Original strand, 13448512 - 13448887
Alignment:
Q  25 cttctttccgataattctctcttcaaacccctttggcaaccatttttctttctcctcttcattgtcatgctccgtccgtttcttttcaggaacaacccat 124  Q
    |||||| |||||| ||||||||||||| ||||| || ||||| ||||||||||| |||||  | ||||  ||  ||| |||||| |||||||||||||||    
T  13448512 cttcttcccgatatttctctcttcaaatcccttcggtaaccacttttctttctcttcttcgctctcatcttctttccctttcttctcaggaacaacccat 13448611  T
Q  125 atgaattcgtgactcgatgcttcaatcccgcacgcaatctcataaagttgtttatccgaaaaatgacatcggcttccaaagcatatgtacaccaccgagt 224  Q
    ||||||  |||||  |||||||| ||| | || || ||||| || ||||||||||| |||||||       ||||||||| |||||||||| ||| ||||    
T  13448612 atgaatgggtgaccggatgcttctatcgcacatgccatctcgtatagttgtttatcagaaaaatagttgatgcttccaaaacatatgtacaacactgagt 13448711  T
Q  225 tatcttgtttcgagttaagccaactcaaacactcgtgcacactcacaacaccctcgtctcctctctgtgctttcgcttgaatagttgtgcgaataagaga 324  Q
    || ||   |  || |  ||||||||||  | |||||||||| ||||| ||||||| | ||| |||| || |||| |||||  |||| |||||||||||||    
T  13448712 taactctctctgaatcgagccaactcaggctctcgtgcacattcacagcaccctcatttcccctctctgatttctcttgagcagttttgcgaataagaga 13448811  T
Q  325 agctggaccaagatgccaagctttgtgacaagtagttttctcgtagtgttcgatatactcttcaccgtcaagttca 400  Q
    || |||||||||||||||| | |||||||  || | ||||||||||||||  ||  ||||||| || |||||||||    
T  13448812 agttggaccaagatgccaaaccttgtgacccgtggctttctcgtagtgttgtatgcactcttctccatcaagttca 13448887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 196 - 400
Target Start/End: Original strand, 13455154 - 13455358
Alignment:
Q  196 gcttccaaagcatatgtacaccaccgagttatcttgtttcgagttaagccaactcaaacactcgtgcacactcacaacaccctcgtctcctctctgtgct 295  Q
    ||||||||| ||||||||||  || |||||| ||   || |||| |||||| ||||  |||||||| ||| |||||| | |||||| ||| |||| || |    
T  13455154 gcttccaaaacatatgtacaatactgagttaactctctttgagtcaagccagctcaggcactcgtgtacattcacaaaaacctcgtttcccctctctgat 13455253  T
Q  296 ttcgcttgaatagttgtgcgaataagagaagctggaccaagatgccaagctttgtgacaagtagttttctcgtagtgttcgatatactcttcaccgtcaa 395  Q
    ||  ||||||  ||| ||| ||||||||||| |||||||| ||||||| | |||||||  || ||||| |||||||||| |||  ||||||| || ||||    
T  13455254 ttttcttgaacggttctgcaaataagagaagttggaccaatatgccaaaccttgtgacctgttgttttttcgtagtgttggatgcactcttctccatcaa 13455353  T
Q  396 gttca 400  Q
     ||||    
T  13455354 attca 13455358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 42 - 129
Target Start/End: Original strand, 13455000 - 13455087
Alignment:
Q  42 tctcttcaaacccctttggcaaccatttttctttctcctcttcattgtcatgctccgtccgtttcttttcaggaacaacccatatgaa 129  Q
    |||||||||| ||||| |||||||| |||| ||||||||||||  | ||||  ||  ||| |||||| || |||||||||||||||||    
T  13455000 tctcttcaaatcccttcggcaaccacttttgtttctcctcttcgctctcatcttctttccctttcttctccggaacaacccatatgaa 13455087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 85; Significance: 2e-40; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 25 - 405
Target Start/End: Original strand, 28385483 - 28385863
Alignment:
Q  25 cttctttccgataattctctcttcaaacccctttggcaaccatttttctttctcctcttcattgtcatgctccgtccgtttcttttcaggaacaacccat 124  Q
    ||||||||| ||  ||||||| ||||| |||||||||| ||| ||||||||||| |||||  | ||||  ||  ||| |||||| |||||||||||||||    
T  28385483 cttctttccaatgtttctctcctcaaatccctttggcagccacttttctttctcttcttcgatctcatcttctttccctttcttctcaggaacaacccat 28385582  T
Q  125 atgaattcgtgactcgatgcttcaatcccgcacgcaatctcataaagttgtttatccgaaaaatgacatcggcttccaaagcatatgtacaccaccgagt 224  Q
    ||||||  |||||  |||||||| |   |||| ||||||||||| ||||||||||| || |||||   |  ||||||||| ||||||||||| || ||||    
T  28385583 atgaatgggtgacctgatgcttctactgcgcatgcaatctcatatagttgtttatcagagaaatggtttatgcttccaaaacatatgtacacaactgagt 28385682  T
Q  225 tatcttgtttcgagttaagccaactcaaacactcgtgcacactcacaacaccctcgtctcctctctgtgctttcgcttgaatagttgtgcgaataagaga 324  Q
    || || | |  || || |||||  |||  ||||||||| | |||||| ||| || || |||  ||| ||||||| |||||| |||| | |||||||  ||    
T  28385683 taactcgctgtgatttgagccagttcaggcactcgtgctcgctcacatcactcttgtttcccttctctgctttctcttgaacagttttacgaataaagga 28385782  T
Q  325 agctggaccaagatgccaagctttgtgacaagtagttttctcgtagtgttcgatatactcttcaccgtcaagttcagcaaa 405  Q
    || |||||||||||||||||| |||||||  || |||||||||||||||| || | ||||||| || ||||||||| ||||    
T  28385783 agttggaccaagatgccaagccttgtgacccgtggttttctcgtagtgtttgacacactcttctccatcaagttcaacaaa 28385863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 39 - 405
Target Start/End: Original strand, 12540848 - 12541214
Alignment:
Q  39 ttctctcttcaaacccctttggcaaccatttttctttctcctcttcattgtcatgctccgtccgtttcttttcaggaacaacccatatgaattcgtgact 138  Q
    ||||||| ||||| ||||| |||| ||| ||||||||||| |||||| | ||||  ||  ||| | |||| |||||||||||||||||||||  |||||     
T  12540848 ttctctcctcaaatcccttcggcatccacttttctttctcttcttcagtctcatcttctttccctctcttctcaggaacaacccatatgaatgggtgacc 12540947  T
Q  139 cgatgcttcaatcccgcacgcaatctcataaagttgtttatccgaaaaatgacatcggcttccaaagcatatgtacaccaccgagttatcttgtttcgag 238  Q
    |  | |||| |   | || ||||||||||| |||||||| ||  | ||||||  |  ||||||||| |||||||||||||| |||||| |||| |  |||    
T  12540948 cattccttctactgcacatgcaatctcatatagttgtttgtcaaagaaatgatttatgcttccaaaacatatgtacaccactgagttaacttgctgtgag 12541047  T
Q  239 ttaagccaactcaaacactcgtgcacactcacaacaccctcgtctcctctctgtgctttcgcttgaatagttgtgcgaataagagaagctggaccaagat 338  Q
    || ||||| || |   |||||||| | ||| || ||||||| | ||| |||  ||||||| |||||||  || |  |||||| ||||| |||||||||||    
T  12541048 ttgagccagctaagggactcgtgctcgctcgcagcaccctcatttcccctccctgctttctcttgaatgtttttctgaataaaagaagttggaccaagat 12541147  T
Q  339 gccaagctttgtgacaagtagttttctcgtagtgttcgatatactcttcaccgtcaagttcagcaaa 405  Q
    ||||||| |||||||  || |||||||||||||||| || | ||||||| || ||||||||| ||||    
T  12541148 gccaagccttgtgacccgtggttttctcgtagtgttggacacactcttctccatcaagttcaacaaa 12541214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 61; Significance: 5e-26; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 25 - 281
Target Start/End: Complemental strand, 3417557 - 3417301
Alignment:
Q  25 cttctttccgataattctctcttcaaacccctttggcaaccatttttctttctcctcttcattgtcatgctccgtccgtttcttttcaggaacaacccat 124  Q
    ||||||||| ||  ||||||| ||||| ||||| |||||||| ||||||||||| ||||| || ||||  ||  | | |||||| ||| |||||||||||    
T  3417557 cttctttccaatgtttctctcctcaaatcccttcggcaaccacttttctttctcttcttcgttctcatcttcttttcctttcttctcaagaacaacccat 3417458  T
Q  125 atgaattcgtgactcgatgcttcaatcccgcacgcaatctcataaagttgtttatccgaaaaatgacatcggcttccaaagcatatgtacaccaccgagt 224  Q
    ||||||  ||||| ||||||||| ||  || | ||||||||||| ||||||||||| || ||||    |  ||||||||| |||||||||| ||| ||||    
T  3417457 atgaatgggtgacccgatgcttctattgcgtatgcaatctcatatagttgtttatcagagaaatagtttaagcttccaaaacatatgtacaacactgagt 3417358  T
Q  225 tatcttgtttcgagttaagccaactcaaacactcgtgcacactcacaacaccctcgt 281  Q
    || ||||||  ||||| ||||||| ||  ||||| ||| ||||| || |||||||||    
T  3417357 taacttgttgtgagttgagccaacgcaggcactcatgctcactctcagcaccctcgt 3417301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 51; Significance: 4e-20; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 39 - 405
Target Start/End: Complemental strand, 12641494 - 12641128
Alignment:
Q  39 ttctctcttcaaacccctttggcaaccatttttctttctcctcttcattgtcatgctccgtccgtttcttttcaggaacaacccatatgaattcgtgact 138  Q
    |||||||||| || || || |||||||| |||||||||||||||||| | ||||  |   ||| |||||| ||||||||||||||||  ||||||||||     
T  12641494 ttctctcttcgaatcctttaggcaaccacttttctttctcctcttcactctcatcttttttccctttcttctcaggaacaacccatacaaattcgtgacc 12641395  T
Q  139 cgatgcttcaatcccgcacgcaatctcataaagttgtttatccgaaaaatgacatcggcttccaaagcatatgtacaccaccgagttatcttgtttcgag 238  Q
     ||   ||| || |||| ||||||||| |||||||||||||| || |||| | |   ||| ||||| |||||||| | ||| || |||||||| || ||     
T  12641394 tgaattttctattccgctcgcaatctcgtaaagttgtttatcagagaaataagagatgctcccaaaacatatgtataacactgaattatcttgctttgaa 12641295  T
Q  239 ttaagccaactcaaacactcgtgcacactcacaacaccctcgtctcctctctgtgctttcgcttgaatagttgtgcgaataagagaagctggaccaagat 338  Q
    || |||||||  | |||||  ||| | || || |||| ||| |  || |||   | |||| ||| || |||| ||||||||||| ||| |||||||||||    
T  12641294 ttgagccaacctagacacttatgcgcgctaaccacactctcattgcccctcatagatttctcttcaaaagttttgcgaataagacaagttggaccaagat 12641195  T
Q  339 gccaagctttgtgacaagtagttttctcgtagtgttcgatatactcttcaccgtcaagttcagcaaa 405  Q
    ||||||| |||| ||   | |||||||| ||||||| |||  | |||||||| ||||||||| ||||    
T  12641194 gccaagccttgtaacccatggttttctcatagtgtttgatgcaatcttcaccatcaagttcaacaaa 12641128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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