View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4681_low_19 (Length: 408)
Name: NF4681_low_19
Description: NF4681
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4681_low_19 |
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| [»] scaffold0831 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 214; Significance: 1e-117; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 9 - 309
Target Start/End: Complemental strand, 44185620 - 44185338
Alignment:
| Q |
9 |
agcagagagcaaatacagattgaaaccgtctcgaggatgtggtgatatctccttaatatttaggaagagataggtgtgattgtacaatgagcgatgcata |
108 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44185620 |
agcagagagcaaatacagattggaaccgtctcgaggatgtggcgatatctccttaatatttaggaagagataggtgtgattgtacaatgagcgatgcata |
44185521 |
T |
|
| Q |
109 |
gatatgaaattggtgcggaacaattgcatgaaataaaagagaccatgatttggagcacaagtaaatcgattgagagatttgaggggtaatttggaaagaa |
208 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
44185520 |
gatatgaaattggtgtggaacaattgcatgaaataaaagagaccatgatttggagcac------------------atttgaggggtaatttggaaagaa |
44185439 |
T |
|
| Q |
209 |
tagaaaacgaaatttcatcaggaatatagctacggttactaaccttgtcactttttgtagccatggatttctttcgcgaaggtgaagccatttctctgtg |
308 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||| |||||| |||| |
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| T |
44185438 |
tagaaaacgaaatttcatcaggaatatagctacggttactaaccttgtcactttttgtagccatggatttctttctcgaacgtgaagcgatttctttgtg |
44185339 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 9 - 335
Target Start/End: Complemental strand, 4876189 - 4875848
Alignment:
| Q |
9 |
agcagagagcaaatacagattgaaaccgtctcgaggatgtggtgatatctccttaatatttaggaagagataggtgtgattgtacaatgagcgatgcata |
108 |
Q |
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|||||||||||||||||||||| |||||||||| |||||||| ||||||||||||||||||| |||||||| ||||||| ||||||||| ||||||||| |
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| T |
4876189 |
agcagagagcaaatacagattggaaccgtctcgtggatgtggcaatatctccttaatatttagaaagagataagtgtgatcgtacaatgatcgatgcata |
4876090 |
T |
|
| Q |
109 |
gatatgaaattggtgcggaacaattgcatgaaat--------------aaaagagaccatgatttggag-cacaagtaaatcgattgagagatttgaggg |
193 |
Q |
| |
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|||||||||||||||||||||| | |||||||| ||||||||| ||||||||||| |||| ||||||| ||||||||||| ||||| |
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| T |
4876089 |
gatatgaaattggtgcggaacatgttcatgaaattagggttttgaaataaaagagacgatgatttggaggcacatgtaaatcaattgagagattggaggg |
4875990 |
T |
|
| Q |
194 |
gtaatttggaaagaatagaaaacgaaatttcatcaggaatatagctacggttactaaccttgtcactttttgtagccatggatttctttcgcgaaggtga |
293 |
Q |
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|||||||||||||||||||||| ||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||| |
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| T |
4875989 |
gtaatttggaaagaatagaaaaggaaatgtcatcgggaatatagctacggttactaaccttgtcactttttgtagccatggatttctttctcgaacgtga |
4875890 |
T |
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| Q |
294 |
agccatttctctgtgaactgtgcaatacaaaatggaagaagc |
335 |
Q |
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| T |
4875889 |
agccatttctctgtgaactgtgcaatacaaagtggaagaagc |
4875848 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 43 - 276
Target Start/End: Complemental strand, 1326563 - 1326315
Alignment:
| Q |
43 |
ggatgtggtgatatctccttaatatttaggaagagataggtgtgattgtacaatgagcgatgcatagatatgaaattggtgcggaacaattgcatgaaat |
142 |
Q |
| |
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|||||||| |||||||||| ||||| ||||||||||| |||| |||||||| ||| | |||||||||||||||||||||||| |||| ||||||||| |
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| T |
1326563 |
ggatgtggcaatatctcctttatattaaggaagagatatgtgtcattgtacagtgaacaatgcatagatatgaaattggtgcgaaacataggcatgaaat |
1326464 |
T |
|
| Q |
143 |
aa--------------aagagaccatgatttgga-gcacaagtaaatcgattgagagatttgaggggtaatttggaaagaatagaaaacgaaatttcatc |
227 |
Q |
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|| ||||||| ||| |||| | ||||| |||||||| |||||||||||||| |||||||||||||||||||| || ||||| ||||| |
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| T |
1326463 |
aagggttttgaaataaaagagactatggtttgcatgcacacgtaaatcgtttgagagatttgagaggtaatttggaaagaatagagaaggaaatgtcatc |
1326364 |
T |
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| Q |
228 |
aggaatatagctacggttactaaccttgtcactttttgtagccatggat |
276 |
Q |
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| T |
1326363 |
agcaatatagctagtgttgctaaccttgtcactttttgtagccatggat |
1326315 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 162; Significance: 2e-86; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 9 - 298
Target Start/End: Complemental strand, 5387781 - 5387477
Alignment:
| Q |
9 |
agcagagagcaaatacagattgaaaccgtctcgaggatgtggtgatatctccttaatatttaggaagagataggtgtgattgtacaatgagcgatgcata |
108 |
Q |
| |
|
|||||||||||||||||||||| |||| ||| |||||||||| |||||||||| |||| ||||| |||| ||||||||| |||||||||||||||||| |
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| T |
5387781 |
agcagagagcaaatacagattggaaccatcttgaggatgtggcaatatctcctttatatataggatgagaaaggtgtgatcatacaatgagcgatgcata |
5387682 |
T |
|
| Q |
109 |
gatatgaaattggtgcggaacaattgcatgaaat--------------aaaagagaccatgatttggag-cacaagtaaatcgattgagagatttgaggg |
193 |
Q |
| |
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||||||||||||||||||||||||||||||||| ||||||||||| ||||||||| |||| ||||||||||||||||||||||||| |
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| T |
5387681 |
aatatgaaattggtgcggaacaattgcatgaaattagggttttgaaataaaagagaccaagatttggaggcacaggtaaatcgattgagagatttgaggg |
5387582 |
T |
|
| Q |
194 |
gtaatttggaaagaatagaaaacgaaatttcatcaggaatatagctacggttactaaccttgtcactttttgtagccatggatttctttcgcgaaggtga |
293 |
Q |
| |
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|||||||||||||||||||||| ||||| ||||| | ||||||| ||| |||||||||||||||||||||||||||||| |||||||||| ||||||||| |
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| T |
5387581 |
gtaatttggaaagaatagaaaaggaaatgtcatcggaaatatagttactgttactaaccttgtcactttttgtagccattgatttctttctcgaaggtga |
5387482 |
T |
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| Q |
294 |
agcca |
298 |
Q |
| |
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||||| |
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| T |
5387481 |
agcca |
5387477 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0831 (Bit Score: 45; Significance: 2e-16; HSPs: 2)
Name: scaffold0831
Description:
Target: scaffold0831; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 54 - 142
Target Start/End: Original strand, 2047 - 2135
Alignment:
| Q |
54 |
tatctccttaatatttaggaagagataggtgtgattgtacaatgagcgatgcatagatatgaaattggtgcggaacaattgcatgaaat |
142 |
Q |
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||||||||| ||||||||||| ||| | |||| |||||||||||| ||||||||| ||||||||||| |||| |||| || |||||||| |
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| T |
2047 |
tatctcctttatatttaggaaaagacatgtgtcattgtacaatgatcgatgcataaatatgaaattgttgcgaaacattttcatgaaat |
2135 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0831; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 139 - 203
Target Start/End: Original strand, 2146 - 2211
Alignment:
| Q |
139 |
aaataaaagagaccatgatttgga-gcacaagtaaatcgattgagagatttgaggggtaatttgga |
203 |
Q |
| |
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|||||||||||||||||| ||| | |||||||||||||| ||||||||||| || |||| |||||| |
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|
| T |
2146 |
aaataaaagagaccatgacttgcatgcacaagtaaatcgcttgagagatttaagaggtagtttgga |
2211 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 53 - 130
Target Start/End: Complemental strand, 26531664 - 26531587
Alignment:
| Q |
53 |
atatctccttaatatttaggaagagataggtgtgattgtacaatgagcgatgcatagatatgaaattggtgcggaaca |
130 |
Q |
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|||||||||| |||||||| |||||||| |||| ||||||||||| ||||||||||||||||||| ||||||||| |
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| T |
26531664 |
atatctcctttatatttagaaagagataagtgttgttgtacaatgactgatgcatagatatgaaatttttgcggaaca |
26531587 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 137 - 188
Target Start/End: Complemental strand, 27183166 - 27183114
Alignment:
| Q |
137 |
tgaaataaaagagaccatgatttgg-agcacaagtaaatcgattgagagattt |
188 |
Q |
| |
|
||||||||||||||||||||||||| | ||||||||||||| ||||||||||| |
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|
| T |
27183166 |
tgaaataaaagagaccatgatttggaaacacaagtaaatcgcttgagagattt |
27183114 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 137 - 188
Target Start/End: Original strand, 27231119 - 27231171
Alignment:
| Q |
137 |
tgaaataaaagagaccatgatttgg-agcacaagtaaatcgattgagagattt |
188 |
Q |
| |
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||||||||||||||||||||||||| | ||||||||||||| ||||||||||| |
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|
| T |
27231119 |
tgaaataaaagagaccatgatttggaaacacaagtaaatcgcttgagagattt |
27231171 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 139 - 193
Target Start/End: Complemental strand, 26531564 - 26531509
Alignment:
| Q |
139 |
aaataaaagagaccatgatttgga-gcacaagtaaatcgattgagagatttgaggg |
193 |
Q |
| |
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|||||||||||||||||||||| | ||||||||||| || |||||||||||||||| |
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| T |
26531564 |
aaataaaagagaccatgatttgcacgcacaagtaaaccgcttgagagatttgaggg |
26531509 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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