View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4681_low_2 (Length: 732)
Name: NF4681_low_2
Description: NF4681
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4681_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 597; Significance: 0; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 597; E-Value: 0
Query Start/End: Original strand, 21 - 728
Target Start/End: Original strand, 5822464 - 5823187
Alignment:
| Q |
21 |
tgcagaagatacgtttcagtgataactcattttcctttgaaatctcagaaataggtgtaggtgcagatgctggtgctaacgcaatatcctgtgaaatcga |
120 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5822464 |
tgcagaagatacgtttcagtgataactcattttcctttgaaatctcagaaataggtgtaggtgcagatgctggtgctaacgcaatatcctgtgaaatcga |
5822563 |
T |
|
| Q |
121 |
tgaagcagggccaagtgcagctcctgagctagtaagttcgattgtagcacgacgagggttgttcttgtgtttctcacaaagttccggcaaaaatactcct |
220 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5822564 |
tgaagcaggaccaagtgcagctcctgagctagtaagttcaattgtagcacgacgagggttgttcttgtgtttctcacaaagttccggcaaaaatactcct |
5822663 |
T |
|
| Q |
221 |
agagtcacatgaatgcagcttagttattgtataacaaaaataaaaggtgaaaatcaaagcagccctaatgttacatatactaaattatttgaacgt---- |
316 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5822664 |
agagtcacatgaatgcagcttagttattgtataacaaaaataaaaggtgaaaatcaaagcagccctaatgttacatatactaaattatttgaacgtggat |
5822763 |
T |
|
| Q |
317 |
--------------tatcttttagtagagctcattacccacttgaactgaatcacttagttattttcttatatcatgtattggtcttagggaagtaannn |
402 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
5822764 |
tctccggaacgatttatcttttagtagagctcattacccacttgaactgaatcacttagttattttcttatatcatgtattggtctt-gggaagtaaatt |
5822862 |
T |
|
| Q |
403 |
nnnnnnnattctcattgactttgacaaatgtatgtgatgatggtaaataaaatagtagcattaacaaacaattgttaccttctccagcagccaaattgaa |
502 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| || |
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|
| T |
5822863 |
tttttttattctcattgactttgacaaatgtatgtgatgatggtaaataaaatagt-gcattaacaaacaattgttaccttctccagcagccaaattaaa |
5822961 |
T |
|
| Q |
503 |
gaaaaggtcaacaatattgggacacttagagaaacaagatggagaacaaagcttgcttgtgaagtaaggctcaaagaaagcatcagatgaaataccaaca |
602 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5822962 |
gaaaaggtcaacaatattgggacacttagagaaacaagatggagaacaaagcttgcttgtgaagtaaggctcaaagaaagcatcagatgaaataccaaca |
5823061 |
T |
|
| Q |
603 |
gaacttctatcaacaccacatgcttccacacattggtctgtctctatgtatgctgctattctctccaccataacttcagatgttcgacattgatactcgg |
702 |
Q |
| |
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|||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
5823062 |
gaacttctatcaacaccacatgcttctacacattcgtctgtctctatgtatgctgctattctctccaccataacttcagatgttcggcattgatactcgg |
5823161 |
T |
|
| Q |
703 |
tttcaccattgatattcttctcagtc |
728 |
Q |
| |
|
|||||||||||||||||||||||||| |
|
|
| T |
5823162 |
tttcaccattgatattcttctcagtc |
5823187 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 310; E-Value: 1e-174
Query Start/End: Original strand, 316 - 728
Target Start/End: Complemental strand, 5829102 - 5828690
Alignment:
| Q |
316 |
ttatcttttagtagagctcattacccacttgaactgaatcacttagttattttcttatatcatgtattggtcttagggaagtaannnnnnnnnn--attc |
413 |
Q |
| |
|
||||||| ||||| ||||||||||| ||||||||||||||| ||| |||||||||||||||||||||| ||||| ||||||||| |||| |
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|
| T |
5829102 |
ttatcttctagtatagctcattaccaacttgaactgaatcagttaattattttcttatatcatgtatttgtctt-gggaagtaaaatattttttttattc |
5829004 |
T |
|
| Q |
414 |
tcattgactttgacaaatgtatgtgatgatggtaaataaaatagtagcattaacaaacaattgttaccttctccagcagccaaattgaagaaaaggtcaa |
513 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| | ||||||||||||||||||||||| ||||||||||||| |
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|
| T |
5829003 |
acattgactttgacaaatgtatgtgatgatggtaaataaaatagt-gcattaacaaacaagtcttaccttctccagcagccaaattaaagaaaaggtcaa |
5828905 |
T |
|
| Q |
514 |
caatattgggacacttagagaaacaagatggagaacaaagcttgcttgtgaagtaaggctcaaagaaagcatcagatgaaataccaacagaacttctatc |
613 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
5828904 |
caatattgggacacttagagaaacaagatggagaacaaagcttgcttgtgaagtaaggctcaaagaaagcatcagatgaaataccaacagaacttctatc |
5828805 |
T |
|
| Q |
614 |
aacaccacatgcttccacacattggtctgtctctatgtatgctgctattctctccaccataacttcagatgttcgacattgatactcggtttcaccattg |
713 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
5828804 |
aacaccacatgcttccacacattgatctgtctctatgtatgctgctattctctccaccataacttcagatgttcggcattgatactcggtttcaccattg |
5828705 |
T |
|
| Q |
714 |
atattcttctcagtc |
728 |
Q |
| |
|
||||||||||||||| |
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|
| T |
5828704 |
atattcttctcagtc |
5828690 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 136; E-Value: 1e-70
Query Start/End: Original strand, 78 - 253
Target Start/End: Complemental strand, 5829368 - 5829193
Alignment:
| Q |
78 |
taggtgcagatgctggtgctaacgcaatatcctgtgaaatcgatgaagcagggccaagtgcagctcctgagctagtaagttcgattgtagcacgacgagg |
177 |
Q |
| |
|
||||||||| ||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||| |
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|
| T |
5829368 |
taggtgcagctgcaggtgctaacgcaatatcctgtgaaatcgatgaagcaggaccaagtgcagctcctgagctagtaagttcaattgtagcacgacgagg |
5829269 |
T |
|
| Q |
178 |
gttgttcttgtgtttctcacaaagttccggcaaaaatactcctagagtcacatgaatgcagcttagttattgtata |
253 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||| ||||| |
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|
| T |
5829268 |
gttggtcttgtgtttctcacaaagttccggcaaaaatactcctgttgtcacattaatgcagcttagttatcgtata |
5829193 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 130; E-Value: 6e-67
Query Start/End: Original strand, 477 - 714
Target Start/End: Original strand, 5832814 - 5833051
Alignment:
| Q |
477 |
ttaccttctccagcagccaaattgaagaaaaggtcaacaatattgggacacttagagaaacaagatggagaacaaagcttgcttgtgaagtaaggctcaa |
576 |
Q |
| |
|
||||| ||||||||||||| ||||||||||||||||||||| || || ||||| | |||||| ||| || ||||| |||| ||||| | ||||||| |
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|
| T |
5832814 |
ttaccctctccagcagccatattgaagaaaaggtcaacaatgttagggcactttttgtaacaagctggtgagcaaagtttgccggtgaattgtggctcaa |
5832913 |
T |
|
| Q |
577 |
agaaagcatcagatgaaataccaacagaacttctatcaacaccacatgcttccacacattggtctgtctctatgtatgctgctattctctccaccataac |
676 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||| ||||||||||| ||||| |
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|
| T |
5832914 |
agaaagcatcagatgaaataccaacagaacttctatcaacaccacatgcttccacacattgatctgtctctatgtactctgaaattctctccactataac |
5833013 |
T |
|
| Q |
677 |
ttcagatgttcgacattgatactcggtttcaccattga |
714 |
Q |
| |
|
||||||||||| |||||||||||| |||||||||||| |
|
|
| T |
5833014 |
ttcagatgttctacattgatactcaatttcaccattga |
5833051 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 79 - 220
Target Start/End: Original strand, 5831980 - 5832121
Alignment:
| Q |
79 |
aggtgcagatgctggtgctaacgcaatatcctgtgaaatcgatgaagcagggccaagtgcagctcctgagctagtaagttcgattgtagcacgacgaggg |
178 |
Q |
| |
|
|||||||| ||| ||||||||| |||| |||| ||||| || ||||| ||||||| ||||||||| ||||| ||| |||| |||||||||||||| |
|
|
| T |
5831980 |
aggtgcagctgcaggtgctaacacaatgtcctctgaaactgaagaagccgggccaaatgcagctccggagctcacaagctcgaccatagcacgacgaggg |
5832079 |
T |
|
| Q |
179 |
ttgttcttgtgtttctcacaaagttccggcaaaaatactcct |
220 |
Q |
| |
|
||| |||||||||||||||| ||||| ||||||||||||||| |
|
|
| T |
5832080 |
ttggtcttgtgtttctcacatagttctggcaaaaatactcct |
5832121 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 65; Significance: 3e-28; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 477 - 701
Target Start/End: Original strand, 24038434 - 24038658
Alignment:
| Q |
477 |
ttaccttctccagcagccaaattgaagaaaaggtcaacaatattgggacacttagagaaacaagatggagaacaaagcttgcttgtgaagtaaggctcaa |
576 |
Q |
| |
|
|||||||| |||||||||||||||||| ||||||||||||||||||| || || | ||||||||| |||||||| ||| |||||| | ||||||| |
|
|
| T |
24038434 |
ttaccttccccagcagccaaattgaagtaaaggtcaacaatattggggcaattttggtaacaagatgatgaacaaagtttggctgtgaattgtggctcaa |
24038533 |
T |
|
| Q |
577 |
agaaagcatcagatgaaataccaacagaacttctatcaacaccacatgcttccacacattggtctgtctctatgtatgctgctattctctccaccataac |
676 |
Q |
| |
|
|| ||||| || ||||| || ||| || | || ||||| |||||||||| ||||||||| ||||||||||||||| | || |||| ||||| || || |
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|
| T |
24038534 |
gcaatgcatcggaagaaattccgacaaaattcctttcaactccacatgctttcacacattgatctgtctctatgtatcccgccattcgctccaacactac |
24038633 |
T |
|
| Q |
677 |
ttcagatgttcgacattgatactcg |
701 |
Q |
| |
|
||| ||||| | ||||||||||||| |
|
|
| T |
24038634 |
ttctgatgtcctacattgatactcg |
24038658 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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