View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4681_low_21 (Length: 394)

Name: NF4681_low_21
Description: NF4681
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4681_low_21
NF4681_low_21
[»] chr5 (17 HSPs)
chr5 (52-394)||(29866655-29866995)
chr5 (105-393)||(29846427-29846704)
chr5 (277-330)||(27488723-27488776)
chr5 (269-323)||(40824079-40824134)
chr5 (61-127)||(40156093-40156159)
chr5 (271-323)||(40693130-40693182)
chr5 (271-322)||(3944990-3945041)
chr5 (264-323)||(35395007-35395065)
chr5 (271-317)||(41863886-41863932)
chr5 (286-315)||(41863143-41863172)
chr5 (271-323)||(4460659-4460711)
chr5 (271-323)||(8545193-8545245)
chr5 (271-323)||(11967284-11967336)
chr5 (265-328)||(14525664-14525725)
chr5 (277-317)||(16202616-16202656)
chr5 (267-323)||(35982553-35982609)
chr5 (279-323)||(39065746-39065790)
[»] chr2 (10 HSPs)
chr2 (52-199)||(9491566-9491714)
chr2 (271-323)||(40859969-40860021)
chr2 (264-315)||(32217003-32217054)
chr2 (271-323)||(35155936-35155988)
chr2 (271-323)||(35468955-35469007)
chr2 (55-106)||(28646452-28646503)
chr2 (264-315)||(32226306-32226357)
chr2 (270-328)||(33201410-33201468)
chr2 (271-328)||(27171071-27171128)
chr2 (264-328)||(34196359-34196423)
[»] chr1 (10 HSPs)
chr1 (55-192)||(12685445-12685583)
chr1 (267-319)||(1146648-1146700)
chr1 (271-311)||(12174493-12174533)
chr1 (271-323)||(12294648-12294700)
chr1 (264-315)||(42470278-42470329)
chr1 (275-317)||(33928082-33928124)
chr1 (264-306)||(42561535-42561577)
chr1 (273-323)||(50945866-50945916)
chr1 (271-328)||(8209100-8209157)
chr1 (271-315)||(49840225-49840269)
[»] chr6 (2 HSPs)
chr6 (62-172)||(32318003-32318114)
chr6 (264-315)||(32570254-32570304)
[»] chr8 (10 HSPs)
chr8 (264-321)||(29283810-29283867)
chr8 (55-201)||(41683172-41683319)
chr8 (265-318)||(11903437-11903490)
chr8 (63-106)||(9067267-9067310)
chr8 (55-150)||(9824858-9824953)
chr8 (271-308)||(34968246-34968283)
chr8 (264-309)||(41372676-41372720)
chr8 (271-315)||(1284352-1284396)
chr8 (264-308)||(6235350-6235394)
chr8 (264-308)||(13220844-13220888)
[»] chr3 (17 HSPs)
chr3 (55-177)||(37743135-37743257)
chr3 (271-321)||(1148941-1148991)
chr3 (271-329)||(8845015-8845073)
chr3 (269-323)||(32797432-32797486)
chr3 (271-328)||(32758171-32758228)
chr3 (271-316)||(34995332-34995377)
chr3 (271-332)||(53995085-53995146)
chr3 (271-327)||(47410326-47410382)
chr3 (271-318)||(51103003-51103050)
chr3 (269-323)||(36643425-36643479)
chr3 (273-315)||(50098306-50098348)
chr3 (66-170)||(11442658-11442759)
chr3 (264-305)||(33091599-33091640)
chr3 (271-316)||(33365301-33365346)
chr3 (264-313)||(35963932-35963981)
chr3 (275-323)||(3503896-3503944)
chr3 (284-328)||(41989647-41989691)
[»] chr4 (9 HSPs)
chr4 (88-185)||(27990947-27991047)
chr4 (131-191)||(9021788-9021850)
chr4 (271-322)||(37442681-37442732)
chr4 (264-332)||(7232570-7232638)
chr4 (264-332)||(17616297-17616364)
chr4 (271-323)||(25156444-25156496)
chr4 (273-323)||(42906299-42906349)
chr4 (264-305)||(27376194-27376235)
chr4 (271-327)||(20004610-20004666)
[»] chr7 (11 HSPs)
chr7 (271-323)||(1441741-1441792)
chr7 (264-316)||(11267216-11267268)
chr7 (271-323)||(19063002-19063054)
chr7 (272-323)||(16840681-16840732)
chr7 (266-309)||(28760682-28760725)
chr7 (271-314)||(45883893-45883936)
chr7 (264-318)||(45883773-45883827)
chr7 (271-324)||(7814390-7814443)
chr7 (264-333)||(32676543-32676612)
chr7 (271-307)||(32806715-32806751)
chr7 (264-308)||(48873314-48873358)


Alignment Details
Target: chr5 (Bit Score: 316; Significance: 1e-178; HSPs: 17)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 52 - 394
Target Start/End: Complemental strand, 29866995 - 29866655
Alignment:
Q  52 ttcagtttcattaataatatatgtagaaaacaatatttaacatagacattatttagtgattgttaaatcttgaaattgcaaagcaaaattgaattctaaa 151  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29866995 ttcagtttcattaataatatatgtagaaaacaatatttaacatagacattatttagtgattgttaaatcttgaaattgcaaagcaaaattgaattctaaa 29866896  T
Q  152 acaaatataaattacttttttgttttgcatatttgggttgctcacaacatttgttagttctttctcacagatttgtagtgatatttttctaattttcatt 251  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29866895 acaaatataaattacttttttgttttgcatatttgggttgctcacaacatttgttagttctttctcacagatttgtagtgatatttttctaattttcatt 29866796  T
Q  252 tgtctgaatgcgtaatcaaaatcaaaatttcttaaaaactattgttcataatttatacgcattagcacaatataaaagcaggcaaatggaaaccgcttgt 351  Q
    |||||| ||||||||||||||||  |||||||||||||||||||||||||||||| ||||||||||||||||||||| ||| ||||||||||||||||||    
T  29866795 tgtctgtatgcgtaatcaaaatc--aatttcttaaaaactattgttcataatttacacgcattagcacaatataaaaacagacaaatggaaaccgcttgt 29866698  T
Q  352 ttgaacgctcgtatgtgtgtataattgaaattcctcccatttc 394  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  29866697 ttgaacgctcgtatgtgtgtataattgaaattcctcccatttc 29866655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 105 - 393
Target Start/End: Complemental strand, 29846704 - 29846427
Alignment:
Q  105 tagtgattgttaaatcttgaaattgcaaagcaaaattgaattctaaaacaaatataaattacttttttgttttgcatatttgggttgctcacaacatttg 204  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29846704 tagtgattgttaaatctt-aaattgcaaagcaaaattgaattctaaaacaaatataaattacttttttgttttgcatatttgggttgctcacaacatttg 29846606  T
Q  205 ttagttctttctcacagatttgtagtgatatttttctaattttcatttgtctgaatgcgtaatcaaaatcaaaatttcttaaaaactattgttcataatt 304  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||    
T  29846605 ttagttctttctcacagatttgtagtgatatttttctaattttcatttgtgtgtatgcgtaatcaaaatcaaaatttcttaaaaactattgttcataatt 29846506  T
Q  305 tatacgcattagcacaatataaaagcaggcaaatggaaaccgcttgtttgaacgctcgtatgtgtgtataattgaaattcctcccattt 393  Q
    ||||| ||| |||||||||||||| |          |||||| ||||||||||||||||||||||||||||||||||||||| ||||||    
T  29846505 tatacacatcagcacaatataaaaac----------aaaccgtttgtttgaacgctcgtatgtgtgtataattgaaattccttccattt 29846427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 277 - 330
Target Start/End: Complemental strand, 27488776 - 27488723
Alignment:
Q  277 aatttcttaaaaactattgttcataatttatacgcattagcacaatataaaagc 330  Q
    |||||| ||||||||||||||||||||||| |||||||||  ||||||||||||    
T  27488776 aatttcataaaaactattgttcataatttacacgcattagtgcaatataaaagc 27488723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 269 - 323
Target Start/End: Original strand, 40824079 - 40824134
Alignment:
Q  269 aaaatcaaaatttcttaaaa-actattgttcataatttatacgcattagcacaata 323  Q
    |||| ||||||||| ||||| || ||||||||||||||||||||||||||||||||    
T  40824079 aaaaacaaaatttcataaaacacaattgttcataatttatacgcattagcacaata 40824134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 61 - 127
Target Start/End: Original strand, 40156093 - 40156159
Alignment:
Q  61 attaataatatatgtagaaaacaatatttaacatagacattatttagtgattgttaaatcttgaaat 127  Q
    ||||||||||||||| ||||| ||||||||| ||| ||||||||||  |||||| ||| ||||||||    
T  40156093 attaataatatatgttgaaaataatatttaatataaacattatttaccgattgtaaaaccttgaaat 40156159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 271 - 323
Target Start/End: Complemental strand, 40693182 - 40693130
Alignment:
Q  271 aatcaaaatttcttaaaaactattgttcataatttatacgcattagcacaata 323  Q
    |||||||||||| |||||| |||||||| ||||||||| |||||| |||||||    
T  40693182 aatcaaaatttcataaaaaatattgttcgtaatttatatgcattaacacaata 40693130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 271 - 322
Target Start/End: Complemental strand, 3945041 - 3944990
Alignment:
Q  271 aatcaaaatttcttaaaaactattgttcataatttatacgcattagcacaat 322  Q
    |||||||||||| ||||||||||||||| ||| |||||| ||||||| ||||    
T  3945041 aatcaaaatttcataaaaactattgttcgtaacttatacacattagctcaat 3944990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 264 - 323
Target Start/End: Complemental strand, 35395065 - 35395007
Alignment:
Q  264 taatcaaaatcaaaatttcttaaaaactattgttcataatttatacgcattagcacaata 323  Q
    ||||||||||||||||||| |||||| ||| |||||||||||| ||  ||||||||||||    
T  35395065 taatcaaaatcaaaatttcataaaaa-tatcgttcataatttacacaaattagcacaata 35395007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 271 - 317
Target Start/End: Complemental strand, 41863932 - 41863886
Alignment:
Q  271 aatcaaaatttcttaaaaactattgttcataatttatacgcattagc 317  Q
    |||||||||||| |||||| |||||||| ||||||||| ||||||||    
T  41863932 aatcaaaatttcataaaaattattgttcgtaatttataagcattagc 41863886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 286 - 315
Target Start/End: Complemental strand, 41863172 - 41863143
Alignment:
Q  286 aaaactattgttcataatttatacgcatta 315  Q
    ||||||||||||||||||||||||||||||    
T  41863172 aaaactattgttcataatttatacgcatta 41863143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 271 - 323
Target Start/End: Original strand, 4460659 - 4460711
Alignment:
Q  271 aatcaaaatttcttaaaaactattgttcataatttatacgcattagcacaata 323  Q
    |||||||||||| ||||||| ||||||  ||||||||||| |||||| |||||    
T  4460659 aatcaaaatttcataaaaacaattgtttgtaatttatacgaattagcgcaata 4460711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 271 - 323
Target Start/End: Original strand, 8545193 - 8545245
Alignment:
Q  271 aatcaaaatttcttaaaaactattgttcataatttatacgcattagcacaata 323  Q
    |||||||||||| |||||||||| ||| ||| |||| |||||||| |||||||    
T  8545193 aatcaaaatttcataaaaactatcgtttatagtttacacgcattatcacaata 8545245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 271 - 323
Target Start/End: Original strand, 11967284 - 11967336
Alignment:
Q  271 aatcaaaatttcttaaaaactattgttcataatttatacgcattagcacaata 323  Q
    |||||||||||  ||||||||| ||| |||||||||| ||||||| |||||||    
T  11967284 aatcaaaatttaataaaaactaatgtgcataatttatgcgcattatcacaata 11967336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 265 - 328
Target Start/End: Complemental strand, 14525725 - 14525664
Alignment:
Q  265 aatcaaaatcaaaatttcttaaaaactattgttcataatttatacgcattagcacaatataaaa 328  Q
    |||||||||||||  ||| |||||| |||||||  |||||||||||||||| ||||||| ||||    
T  14525725 aatcaaaatcaaa--ttcgtaaaaattattgtttgtaatttatacgcattaacacaataaaaaa 14525664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 277 - 317
Target Start/End: Original strand, 16202616 - 16202656
Alignment:
Q  277 aatttcttaaaaactattgttcataatttatacgcattagc 317  Q
    |||||| ||||||||| ||||| ||||||||||||||||||    
T  16202616 aatttcataaaaactaatgttcgtaatttatacgcattagc 16202656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 267 - 323
Target Start/End: Complemental strand, 35982609 - 35982553
Alignment:
Q  267 tcaaaatcaaaatttcttaaaaactattgttcataatttatacgcattagcacaata 323  Q
    |||||||||||||||| || ||| |||  |||||||||||||||| ||| |||||||    
T  35982609 tcaaaatcaaaatttcatataaaatatcattcataatttatacgcgttaacacaata 35982553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 279 - 323
Target Start/End: Original strand, 39065746 - 39065790
Alignment:
Q  279 tttcttaaaaactattgttcataatttatacgcattagcacaata 323  Q
    |||| |||||| || ||||| ||||||||||||||||||||||||    
T  39065746 tttcataaaaattaatgttcgtaatttatacgcattagcacaata 39065790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 57; Significance: 1e-23; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 52 - 199
Target Start/End: Original strand, 9491566 - 9491714
Alignment:
Q  52 ttcagtttcattaataatatatgtagaaaacaatatttaacatagacattatttagtgattgttaaatcttgaaattgcaaagcaaaattgaattctaaa 151  Q
    |||||||| |||||||||||||||  |||| |||||||||  |||||||||||||   ||| | ||| ||||||||  ||||| || ||||||||||||     
T  9491566 ttcagtttaattaataatatatgtttaaaataatatttaatgtagacattatttaccaattttaaaaccttgaaataacaaagtaatattgaattctaac 9491665  T
Q  152 acaaatataaattactttttt-gttttgcatatttgggttgctcacaac 199  Q
    |||||||||||||| ||||||  |||||||||||| |||||| ||||||    
T  9491666 acaaatataaattatttttttacttttgcatattttggttgcacacaac 9491714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 271 - 323
Target Start/End: Original strand, 40859969 - 40860021
Alignment:
Q  271 aatcaaaatttcttaaaaactattgttcataatttatacgcattagcacaata 323  Q
    |||||||||||| | ||||||||||||| |||||||||||||||||| |||||    
T  40859969 aatcaaaatttcattaaaactattgttcgtaatttatacgcattagcgcaata 40860021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 264 - 315
Target Start/End: Complemental strand, 32217054 - 32217003
Alignment:
Q  264 taatcaaaatcaaaatttcttaaaaactattgttcataatttatacgcatta 315  Q
    ||||||||||||||||| | |||||| ||||||| |||||||||||||||||    
T  32217054 taatcaaaatcaaaattgcataaaaaatattgtttataatttatacgcatta 32217003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 271 - 323
Target Start/End: Original strand, 35155936 - 35155988
Alignment:
Q  271 aatcaaaatttcttaaaaactattgttcataatttatacgcattagcacaata 323  Q
    |||||||||||| |||||| || | |||||||||||||||||||| |||||||    
T  35155936 aatcaaaatttcataaaaaataatattcataatttatacgcattaacacaata 35155988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 271 - 323
Target Start/End: Original strand, 35468955 - 35469007
Alignment:
Q  271 aatcaaaatttcttaaaaactattgttcataatttatacgcattagcacaata 323  Q
    |||||||||||| |  ||| ||| |||||||||||||||||||||||||||||    
T  35468955 aatcaaaatttcattgaaaatatagttcataatttatacgcattagcacaata 35469007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 55 - 106
Target Start/End: Complemental strand, 28646503 - 28646452
Alignment:
Q  55 agtttcattaataatatatgtagaaaacaatatttaacatagacattattta 106  Q
    ||||| ||||||||||||||| ||||| ||||||||| ||| ||||||||||    
T  28646503 agtttaattaataatatatgttgaaaataatatttaatatatacattattta 28646452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 264 - 315
Target Start/End: Complemental strand, 32226357 - 32226306
Alignment:
Q  264 taatcaaaatcaaaatttcttaaaaactattgttcataatttatacgcatta 315  Q
    ||||||||||||||||| | |||||| ||||| | |||||||||||||||||    
T  32226357 taatcaaaatcaaaattgcataaaaaatattgcttataatttatacgcatta 32226306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 270 - 328
Target Start/End: Original strand, 33201410 - 33201468
Alignment:
Q  270 aaatcaaaatttcttaaaaactattgttcataatttatacgcattagcacaatataaaa 328  Q
    ||||||||||||| | ||||||||||||| ||||||||| | |||||| ||||| ||||    
T  33201410 aaatcaaaatttcattaaaactattgttcgtaatttatatgtattagcgcaataaaaaa 33201468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 271 - 328
Target Start/End: Original strand, 27171071 - 27171128
Alignment:
Q  271 aatcaaaatttcttaaaaactattgttcataatttatacgcattagcacaatataaaa 328  Q
    |||||||||||| | ||||||| ||||| ||||||||||| ||||| |||||| ||||    
T  27171071 aatcaaaatttcatgaaaactaatgttcgtaatttatacgtattagtacaataaaaaa 27171128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 264 - 328
Target Start/End: Original strand, 34196359 - 34196423
Alignment:
Q  264 taatcaaaatcaaaatttcttaaaaactattgttcataatttatacgcattagcacaatataaaa 328  Q
    ||||||||||||||||||| || ||| ||  || ||||||||| |||||||||| ||||| ||||    
T  34196359 taatcaaaatcaaaatttcatataaaataccgtccataatttacacgcattagcgcaataaaaaa 34196423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 51; Significance: 4e-20; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 55 - 192
Target Start/End: Complemental strand, 12685583 - 12685445
Alignment:
Q  55 agtttcattaataatatatgtagaaaacaatatttaacatagacattatttagtgattgttaaatcttgaaattgcaaagcaaaattgaattctaaaaca 154  Q
    ||||| ||||||||||||| | || || ||| ||||| ||||||||||||||   |||||||||  ||||||| |||||| ||||||||||| ||| |||    
T  12685583 agtttaattaataatatatattgagaataatgtttaatatagacattatttatgaattgttaaacattgaaatagcaaagtaaaattgaattgtaacaca 12685484  T
Q  155 aatataaattactttttt-gttttgcatatttgggttgc 192  Q
    ||||||||||  ||||||  |||||||||||| ||||||    
T  12685483 aatataaattgtttttttaattttgcatattttggttgc 12685445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 267 - 319
Target Start/End: Original strand, 1146648 - 1146700
Alignment:
Q  267 tcaaaatcaaaatttcttaaaaactattgttcataatttatacgcattagcac 319  Q
    |||||||||||||||  |||||||||| |||  ||||||||||||||||||||    
T  1146648 tcaaaatcaaaattttataaaaactatcgttggtaatttatacgcattagcac 1146700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 271 - 311
Target Start/End: Complemental strand, 12174533 - 12174493
Alignment:
Q  271 aatcaaaatttcttaaaaactattgttcataatttatacgc 311  Q
    |||||||||||  ||||||||||||||||||||||||||||    
T  12174533 aatcaaaatttgataaaaactattgttcataatttatacgc 12174493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 271 - 323
Target Start/End: Original strand, 12294648 - 12294700
Alignment:
Q  271 aatcaaaatttcttaaaaactattgttcataatttatacgcattagcacaata 323  Q
    |||||||||||| |||||||||  |||||||||||||||||||| || |||||    
T  12294648 aatcaaaatttcataaaaactaccgttcataatttatacgcatttgcgcaata 12294700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 264 - 315
Target Start/End: Complemental strand, 42470329 - 42470278
Alignment:
Q  264 taatcaaaatcaaaatttcttaaaaactattgttcataatttatacgcatta 315  Q
    ||||||||||||||||||| |||||| |||||||  ||||||| ||||||||    
T  42470329 taatcaaaatcaaaatttcataaaaattattgtttgtaatttaaacgcatta 42470278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 275 - 317
Target Start/End: Complemental strand, 33928124 - 33928082
Alignment:
Q  275 aaaatttcttaaaaactattgttcataatttatacgcattagc 317  Q
    |||||||| ||||||| ||||||||||||||||||| ||||||    
T  33928124 aaaatttcataaaaacaattgttcataatttatacgtattagc 33928082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 264 - 306
Target Start/End: Complemental strand, 42561577 - 42561535
Alignment:
Q  264 taatcaaaatcaaaatttcttaaaaactattgttcataattta 306  Q
    ||||||||||||||||||| ||||||  |||||||||||||||    
T  42561577 taatcaaaatcaaaatttcataaaaaacattgttcataattta 42561535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 273 - 323
Target Start/End: Original strand, 50945866 - 50945916
Alignment:
Q  273 tcaaaatttcttaaaaactattgttcataatttatacgcattagcacaata 323  Q
    |||||||||  ||||||||||||||| ||| |||||||||||| |||||||    
T  50945866 tcaaaattttataaaaactattgttcttaagttatacgcattaacacaata 50945916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 271 - 328
Target Start/End: Complemental strand, 8209157 - 8209100
Alignment:
Q  271 aatcaaaatttcttaaaaactattgttcataatttatacgcattagcacaatataaaa 328  Q
    ||||||||||||||||||| |||| || |||||||||| || ||| ||||||| ||||    
T  8209157 aatcaaaatttcttaaaaattattattgataatttatatgcgttatcacaataaaaaa 8209100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 271 - 315
Target Start/End: Original strand, 49840225 - 49840269
Alignment:
Q  271 aatcaaaatttcttaaaaactattgttcataatttatacgcatta 315  Q
    |||||||||||| ||||||||| |  |||||||||||||||||||    
T  49840225 aatcaaaatttcataaaaactaatactcataatttatacgcatta 49840269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 48; Significance: 2e-18; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 62 - 172
Target Start/End: Complemental strand, 32318114 - 32318003
Alignment:
Q  62 ttaataatatatgtagaaa-acaatatttaacatagacattatttagtgattgttaaatcttgaaattgcaaagcaaaattgaattctaaaacaaatata 160  Q
    ||||||||||||||  ||| | ||| ||||| ||||||||||||||   |  |||||| |||||||| |||||| || ||||||||||||||||||||||    
T  32318114 ttaataatatatgtccaaatataatttttaatatagacattatttatcaaccgttaaaacttgaaatagcaaagtaatattgaattctaaaacaaatata 32318015  T
Q  161 aattactttttt 172  Q
    ||||||||||||    
T  32318014 aattactttttt 32318003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 264 - 315
Target Start/End: Complemental strand, 32570304 - 32570254
Alignment:
Q  264 taatcaaaatcaaaatttcttaaaaactattgttcataatttatacgcatta 315  Q
    ||||| ||||||||||||| ||||||||| ||||| ||||||||||||||||    
T  32570304 taatctaaatcaaaatttcataaaaacta-tgttcgtaatttatacgcatta 32570254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 46; Significance: 4e-17; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 264 - 321
Target Start/End: Complemental strand, 29283867 - 29283810
Alignment:
Q  264 taatcaaaatcaaaatttcttaaaaactattgttcataatttatacgcattagcacaa 321  Q
    ||||||||||||||||||| |||||||||| |||||||||||||| ||||||||||||    
T  29283867 taatcaaaatcaaaatttcataaaaactatagttcataatttataagcattagcacaa 29283810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 55 - 201
Target Start/End: Complemental strand, 41683319 - 41683172
Alignment:
Q  55 agtttcattaataatatatgtagaaaacaatatttaacatagacattatttagtgattgttaaatcttgaaattgcaaagcaaaattgaattctaaaaca 154  Q
    ||||| ||||||||||| ||| ||||| ||||||||| |||||||||||||| | |  |||||| |||||||| | |  | || |||||||||||| ||     
T  41683319 agtttaattaataatatttgttgaaaataatatttaatatagacattatttactaaaagttaaaccttgaaatagaaccgtaatattgaattctaacacg 41683220  T
Q  155 aatataaattactttttt-gttttgcatatttgggttgctcacaacat 201  Q
     ||| |||||||||||||  |||||||||| | |||||| ||||||||    
T  41683219 gataaaaattacttttttacttttgcatatgttggttgcacacaacat 41683172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 265 - 318
Target Start/End: Original strand, 11903437 - 11903490
Alignment:
Q  265 aatcaaaatcaaaatttcttaaaaactattgttcataatttatacgcattagca 318  Q
    ||||||||||||||||||   |||||| ||||||||||||||||||||||||||    
T  11903437 aatcaaaatcaaaatttcacgaaaacttttgttcataatttatacgcattagca 11903490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 63 - 106
Target Start/End: Complemental strand, 9067310 - 9067267
Alignment:
Q  63 taataatatatgtagaaaacaatatttaacatagacattattta 106  Q
    ||||||||||||| ||||||||||||||| ||||| ||||||||    
T  9067310 taataatatatgttgaaaacaatatttaatatagatattattta 9067267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 55 - 150
Target Start/End: Original strand, 9824858 - 9824953
Alignment:
Q  55 agtttcattaataatatatgtagaaaacaatatttaacatagacattatttagtgattgttaaatcttgaaattgcaaagcaaaattgaattctaa 150  Q
    ||||| ||||||||||||||| ||||| |||||| || || |||||||||||   ||||||||| ||| ||||  |||||  ||| ||||||||||    
T  9824858 agtttaattaataatatatgttgaaaataatattaaatattgacattatttaccaattgttaaaccttaaaataacaaagttaaactgaattctaa 9824953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 271 - 308
Target Start/End: Complemental strand, 34968283 - 34968246
Alignment:
Q  271 aatcaaaatttcttaaaaactattgttcataatttata 308  Q
    ||||||||||||||||||||||||||  ||||||||||    
T  34968283 aatcaaaatttcttaaaaactattgtatataatttata 34968246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 264 - 309
Target Start/End: Original strand, 41372676 - 41372720
Alignment:
Q  264 taatcaaaatcaaaatttcttaaaaactattgttcataatttatac 309  Q
    ||||||||||||||||| | || |||||||||||||||||||||||    
T  41372676 taatcaaaatcaaaatt-catataaactattgttcataatttatac 41372720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 271 - 315
Target Start/End: Original strand, 1284352 - 1284396
Alignment:
Q  271 aatcaaaatttcttaaaaactattgttcataatttatacgcatta 315  Q
    |||||||||||| |||||||| | |||| ||||||||||||||||    
T  1284352 aatcaaaatttcataaaaactgtcgttcgtaatttatacgcatta 1284396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 264 - 308
Target Start/End: Complemental strand, 6235394 - 6235350
Alignment:
Q  264 taatcaaaatcaaaatttcttaaaaactattgttcataatttata 308  Q
    ||||||||||||||||||  |||||| |||||||| |||||||||    
T  6235394 taatcaaaatcaaaattttataaaaattattgttcgtaatttata 6235350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 264 - 308
Target Start/End: Original strand, 13220844 - 13220888
Alignment:
Q  264 taatcaaaatcaaaatttcttaaaaactattgttcataatttata 308  Q
    ||||| ||||||||||||  ||||||||| |||||||||||||||    
T  13220844 taatccaaatcaaaattttataaaaactaatgttcataatttata 13220888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 17)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 55 - 177
Target Start/End: Complemental strand, 37743257 - 37743135
Alignment:
Q  55 agtttcattaataatatatgtagaaaacaatatttaacatagacattatttagtgattgttaaatcttgaaattgcaaagcaaaattgaattctaaaaca 154  Q
    ||||| ||| |||||||||||  |||| || |||||| |||||||||||| |   ||| ||||| |||||||| |||||  || |||||||||||| |||    
T  37743257 agtttaatttataatatatgtcaaaaataacatttaatatagacattattaatcaattattaaaccttgaaatagcaaactaatattgaattctaagaca 37743158  T
Q  155 aatataaattacttttttgtttt 177  Q
    |||||| ||||| ||||| ||||    
T  37743157 aatatatattacctttttatttt 37743135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 271 - 321
Target Start/End: Original strand, 1148941 - 1148991
Alignment:
Q  271 aatcaaaatttcttaaaaactattgttcataatttatacgcattagcacaa 321  Q
    |||||||||||| ||||||||||||||| | |||||||||||||| |||||    
T  1148941 aatcaaaatttcataaaaactattgttcgtgatttatacgcattaacacaa 1148991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 271 - 329
Target Start/End: Complemental strand, 8845073 - 8845015
Alignment:
Q  271 aatcaaaatttcttaaaaactattgttcataatttatacgcattagcacaatataaaag 329  Q
    |||||||||||| |||||||||| |||||||||||||| |||||||  ||||| |||||    
T  8845073 aatcaaaatttcataaaaactatcgttcataatttatatgcattagtgcaataaaaaag 8845015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 269 - 323
Target Start/End: Original strand, 32797432 - 32797486
Alignment:
Q  269 aaaatcaaaatttcttaaaaactattgttcataatttatacgcattagcacaata 323  Q
    ||||| |||||||| |||||| |||||||| |||||||||| |||||||||||||    
T  32797432 aaaattaaaatttcataaaaattattgttcgtaatttatacacattagcacaata 32797486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 271 - 328
Target Start/End: Complemental strand, 32758228 - 32758171
Alignment:
Q  271 aatcaaaatttcttaaaaactattgttcataatttatacgcattagcacaatataaaa 328  Q
    |||||||||||| |||||| ||||||| |||||||||| |||||||| ||||| ||||    
T  32758228 aatcaaaatttcataaaaaatattgtttataatttatatgcattagcgcaataaaaaa 32758171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 271 - 316
Target Start/End: Complemental strand, 34995377 - 34995332
Alignment:
Q  271 aatcaaaatttcttaaaaactattgttcataatttatacgcattag 316  Q
    |||||||||||| ||||| |||||||||||||||||||| ||||||    
T  34995377 aatcaaaatttcataaaagctattgttcataatttatacccattag 34995332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 271 - 332
Target Start/End: Complemental strand, 53995146 - 53995085
Alignment:
Q  271 aatcaaaatttcttaaaaactattgttcataatttatacgcattagcacaatataaaagcag 332  Q
    |||||||||||| ||||||||| ||||  |||||||||||||||||| ||||| || |||||    
T  53995146 aatcaaaatttcataaaaactactgtttgtaatttatacgcattagcgcaatagaagagcag 53995085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 271 - 327
Target Start/End: Complemental strand, 47410382 - 47410326
Alignment:
Q  271 aatcaaaatttcttaaaaactattgttcataatttatacgcattagcacaatataaa 327  Q
    |||||||||||| |||||| |||||||| |||||||||| ||||| | |||||||||    
T  47410382 aatcaaaatttcataaaaattattgttcgtaatttatacacattaacgcaatataaa 47410326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 271 - 318
Target Start/End: Complemental strand, 51103050 - 51103003
Alignment:
Q  271 aatcaaaatttcttaaaaactattgttcataatttatacgcattagca 318  Q
    |||||||||||  |||||| ||||||||||||||||||| ||||||||    
T  51103050 aatcaaaattttataaaaattattgttcataatttatacacattagca 51103003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 269 - 323
Target Start/End: Complemental strand, 36643479 - 36643425
Alignment:
Q  269 aaaatcaaaatttcttaaaaactattgttcataatttatacgcattagcacaata 323  Q
    |||||||||||||| |||||| |||| ||  ||||||||||| ||||||||||||    
T  36643479 aaaatcaaaatttcataaaaaatattattattaatttatacgaattagcacaata 36643425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 273 - 315
Target Start/End: Complemental strand, 50098348 - 50098306
Alignment:
Q  273 tcaaaatttcttaaaaactattgttcataatttatacgcatta 315  Q
    |||||||||| || ||||||||||| |||||||||||||||||    
T  50098348 tcaaaatttcatataaactattgtttataatttatacgcatta 50098306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 66 - 170
Target Start/End: Original strand, 11442658 - 11442759
Alignment:
Q  66 taatatatgtagaaaacaatatttaacatagacattatttagtgattgttaaatcttgaaattgcaaagcaaaattgaattctaaaacaaatataaatta 165  Q
    |||||||||| ||||| ||||||||  |||||||||||||| | ||| ||| ||||| ||||  ||||  || |||||| ||| ||||||||||||||||    
T  11442658 taatatatgttgaaaataatatttagtatagacattatttact-attattagatcttaaaat--caaaataatattgaactctgaaacaaatataaatta 11442754  T
Q  166 ctttt 170  Q
     ||||    
T  11442755 ttttt 11442759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 264 - 305
Target Start/End: Original strand, 33091599 - 33091640
Alignment:
Q  264 taatcaaaatcaaaatttcttaaaaactattgttcataattt 305  Q
    |||||||||| |||||||||||||||  ||||||||||||||    
T  33091599 taatcaaaattaaaatttcttaaaaaacattgttcataattt 33091640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 271 - 316
Target Start/End: Complemental strand, 33365346 - 33365301
Alignment:
Q  271 aatcaaaatttcttaaaaactattgttcataatttatacgcattag 316  Q
    |||||||||||| ||||||||| ||||| ||||||||| |||||||    
T  33365346 aatcaaaatttcataaaaactaatgttcgtaatttataagcattag 33365301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 264 - 313
Target Start/End: Original strand, 35963932 - 35963981
Alignment:
Q  264 taatcaaaatcaaaatttcttaaaaactattgttcataatttatacgcat 313  Q
    ||||||||||||||||||| | ||||||||| ||| ||||||||| ||||    
T  35963932 taatcaaaatcaaaatttcattaaaactattattcgtaatttatatgcat 35963981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 275 - 323
Target Start/End: Complemental strand, 3503944 - 3503896
Alignment:
Q  275 aaaatttcttaaaaactattgttcataatttatacgcattagcacaata 323  Q
    ||||| || ||||||||| |||||||| ||||||||||||| |||||||    
T  3503944 aaaatctcataaaaactaatgttcatagtttatacgcattatcacaata 3503896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 284 - 328
Target Start/End: Original strand, 41989647 - 41989691
Alignment:
Q  284 taaaaactattgttcataatttatacgcattagcacaatataaaa 328  Q
    ||||||||||||||| |||| |||||| |||||| ||||||||||    
T  41989647 taaaaactattgttcgtaatgtatacgaattagcgcaatataaaa 41989691  T

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Target: chr4 (Bit Score: 38; Significance: 0.000000000002; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 88 - 185
Target Start/End: Original strand, 27990947 - 27991047
Alignment:
Q  88 ttaacatagacattatttagtgattgttaaatcttgaaattgcaaagcaaaat--tgaattctaaaacaaatataaattactttttt-gttttgcatatt 184  Q
    |||| |||||||||||||| | ||| ||||| |||||||| || ||| | |||  |||||||||| |||||||||||||||||||||  |||||||||||    
T  27990947 ttaatatagacattatttacttattcttaaaccttgaaatagccaagtataatattgaattctaacacaaatataaattacttttttacttttgcatatt 27991046  T
Q  185 t 185  Q
    |    
T  27991047 t 27991047  T

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Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 131 - 191
Target Start/End: Complemental strand, 9021850 - 9021788
Alignment:
Q  131 aaagcaaaattgaattctaaaacaaatataaattactttttt--gttttgcatatttgggttg 191  Q
    ||||||| |||||||||||| |||||||||||||||||||||   |||||||||||| |||||    
T  9021850 aaagcaatattgaattctaacacaaatataaattactttttttacttttgcatattttggttg 9021788  T

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Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 271 - 322
Target Start/End: Complemental strand, 37442732 - 37442681
Alignment:
Q  271 aatcaaaatttcttaaaaactattgttcataatttatacgcattagcacaat 322  Q
    ||||||||||||  ||||| ||||||||| ||||||||||||||||||||||    
T  37442732 aatcaaaatttcagaaaaattattgttcaaaatttatacgcattagcacaat 37442681  T

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Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 264 - 332
Target Start/End: Original strand, 7232570 - 7232638
Alignment:
Q  264 taatcaaaatcaaaatttcttaaaaactattgttcataatttatacgcattagcacaatataaaagcag 332  Q
    ||||| ||||| |||||||  ||||||||  ||||||||||||||||||||| | ||||| ||||||||    
T  7232570 taatctaaatctaaatttcacaaaaactaccgttcataatttatacgcattaccgcaataaaaaagcag 7232638  T

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Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 264 - 332
Target Start/End: Complemental strand, 17616364 - 17616297
Alignment:
Q  264 taatcaaaatcaaaatttcttaaaaactattgttcataatttatacgcattagcacaatataaaagcag 332  Q
    ||||||||||||||||||||  |||| |||  |||||||| |||||||||||| |||||| ||||||||    
T  17616364 taatcaaaatcaaaatttctataaaa-tatctttcataatatatacgcattaggacaataaaaaagcag 17616297  T

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Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 271 - 323
Target Start/End: Complemental strand, 25156496 - 25156444
Alignment:
Q  271 aatcaaaatttcttaaaaactattgttcataatttatacgcattagcacaata 323  Q
    ||||||||||   ||||||||||||||||||||||||| ||||||||| ||||    
T  25156496 aatcaaaattctataaaaactattgttcataatttatatgcattagcataata 25156444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 273 - 323
Target Start/End: Complemental strand, 42906349 - 42906299
Alignment:
Q  273 tcaaaatttcttaaaaactattgttcataatttatacgcattagcacaata 323  Q
    |||||||||| ||||||||||||||  ||||||||| |||||||| |||||    
T  42906349 tcaaaatttcataaaaactattgtttgtaatttatatgcattagcgcaata 42906299  T

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Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 264 - 305
Target Start/End: Complemental strand, 27376235 - 27376194
Alignment:
Q  264 taatcaaaatcaaaatttcttaaaaactattgttcataattt 305  Q
    ||||||||||||||||||| |||||| ||| |||||||||||    
T  27376235 taatcaaaatcaaaatttcataaaaaatatcgttcataattt 27376194  T

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Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 271 - 327
Target Start/End: Complemental strand, 20004666 - 20004610
Alignment:
Q  271 aatcaaaatttcttaaaaactattgttcataatttatacgcattagcacaatataaa 327  Q
    |||||| ||||| ||||||||||| ||||||| |||||||| ||| | |||||||||    
T  20004666 aatcaatatttcataaaaactattattcataagttatacgcgttaacgcaatataaa 20004610  T

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Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 271 - 323
Target Start/End: Original strand, 1441741 - 1441792
Alignment:
Q  271 aatcaaaatttcttaaaaactattgttcataatttatacgcattagcacaata 323  Q
    |||||||||||| ||||| ||||||||| |||||||||||||||||| |||||    
T  1441741 aatcaaaatttcataaaa-ctattgttcgtaatttatacgcattagcgcaata 1441792  T

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Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 264 - 316
Target Start/End: Complemental strand, 11267268 - 11267216
Alignment:
Q  264 taatcaaaatcaaaatttcttaaaaactattgttcataatttatacgcattag 316  Q
    ||||||||||| |||||||  |||||||||| ||||||||| |||||||||||    
T  11267268 taatcaaaatctaaatttcacaaaaactattcttcataattcatacgcattag 11267216  T

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Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 271 - 323
Target Start/End: Original strand, 19063002 - 19063054
Alignment:
Q  271 aatcaaaatttcttaaaaactattgttcataatttatacgcattagcacaata 323  Q
    |||||||||||| |||||| || | ||||||||||||| ||||||||||||||    
T  19063002 aatcaaaatttcataaaaattactcttcataatttatatgcattagcacaata 19063054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 272 - 323
Target Start/End: Original strand, 16840681 - 16840732
Alignment:
Q  272 atcaaaatttcttaaaaactattgttcataatttatacgcattagcacaata 323  Q
    ||||||||||| ||||||||||||||| ||||||||||  |||||| |||||    
T  16840681 atcaaaatttcataaaaactattgttcgtaatttatacatattagcgcaata 16840732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 266 - 309
Target Start/End: Original strand, 28760682 - 28760725
Alignment:
Q  266 atcaaaatcaaaatttcttaaaaactattgttcataatttatac 309  Q
    ||||||||||||||| | |||||||||| |||||||||||||||    
T  28760682 atcaaaatcaaaattgcataaaaactatcgttcataatttatac 28760725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 271 - 314
Target Start/End: Complemental strand, 45883936 - 45883893
Alignment:
Q  271 aatcaaaatttcttaaaaactattgttcataatttatacgcatt 314  Q
    |||||||||||| |||||| |||||||||| |||||||||||||    
T  45883936 aatcaaaatttcataaaaaatattgttcatgatttatacgcatt 45883893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 264 - 318
Target Start/End: Complemental strand, 45883827 - 45883773
Alignment:
Q  264 taatcaaaatcaaaatttcttaaaaactattgttcataatttatacgcattagca 318  Q
    |||| |||||||||||| | ||||||||| |||||||||||||||| | ||||||    
T  45883827 taataaaaatcaaaattgcataaaaactactgttcataatttatacactttagca 45883773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 271 - 324
Target Start/End: Original strand, 7814390 - 7814443
Alignment:
Q  271 aatcaaaatttcttaaaaactattgttcataatttatacgcattagcacaatat 324  Q
    |||||||||||| |||| | |||||||||| |||||||||||||| | ||||||    
T  7814390 aatcaaaatttcataaatattattgttcatgatttatacgcattaccgcaatat 7814443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 264 - 333
Target Start/End: Original strand, 32676543 - 32676612
Alignment:
Q  264 taatcaaaatcaaaatttcttaaaaactattgttcataatttatacgcattagcacaatataaaagcagg 333  Q
    ||||||||||||||||||  |||| | || | |||||||||||||  ||||| |||||||||||| ||||    
T  32676543 taatcaaaatcaaaattttataaatattactattcataatttatatacattaacacaatataaaaacagg 32676612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 271 - 307
Target Start/End: Original strand, 32806715 - 32806751
Alignment:
Q  271 aatcaaaatttcttaaaaactattgttcataatttat 307  Q
    |||||||||||| |||||| |||||||||||||||||    
T  32806715 aatcaaaatttcataaaaattattgttcataatttat 32806751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 264 - 308
Target Start/End: Complemental strand, 48873358 - 48873314
Alignment:
Q  264 taatcaaaatcaaaatttcttaaaaactattgttcataatttata 308  Q
    ||||| |||| |||||||| ||||||||||| |||||||||||||    
T  48873358 taatccaaattaaaatttcataaaaactattattcataatttata 48873314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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