View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4681_low_24 (Length: 382)
Name: NF4681_low_24
Description: NF4681
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4681_low_24 |
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Alignment Details
Target: chr4 (Bit Score: 248; Significance: 1e-137; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 248; E-Value: 1e-137
Query Start/End: Original strand, 44 - 372
Target Start/End: Complemental strand, 40572986 - 40572652
Alignment:
| Q |
44 |
tgctcttataaatgtattttttgaccggtatctacttataaatattaacatcatttaattaacagtagaaagactaaatttatgtaataaaagaaaga-- |
141 |
Q |
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| T |
40572986 |
tgctcttataaatgtattttttgaccggtatctacttataaatattaacatcatttaattaacagtagaaagactaaatttatgtaataaaagaaagact |
40572887 |
T |
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| Q |
142 |
----ttgttccggaccgatcaaaaggtcaattttacagtgatacgtggataaaaacatccaccaacttacctgaaagaccacgtcaacaacaatacgtct |
237 |
Q |
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| T |
40572886 |
gaatttgttccggaccaatcaaaaggtcaatttcacagtgacacgtggatgaaaacatccactgacttatctgaaagaccacgtcaacaacaatacgtct |
40572787 |
T |
|
| Q |
238 |
tgctccactagaacatgccttggggcggatctggataacacggagatggttatccttcatgatatgattcattttcctacactttcgtatatacttacct |
337 |
Q |
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||||||||||||||||||||||| |||||| |||||||||||||||||||||||| |||||||||||||||| ||||||||||||| || |||||| ||| |
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| T |
40572786 |
tgctccactagaacatgccttggagcggatttggataacacggagatggttatccctcatgatatgattcatcttcctacactttcatacatacttccct |
40572687 |
T |
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| Q |
338 |
tgtttttcatactaaacttgatcttcggagtatta |
372 |
Q |
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||||||| ||||||||||||||||||||| ||||| |
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| T |
40572686 |
tgttttttatactaaacttgatcttcggaatatta |
40572652 |
T |
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