View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4681_low_34 (Length: 340)
Name: NF4681_low_34
Description: NF4681
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4681_low_34 |
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Alignment Details
Target: chr6 (Bit Score: 293; Significance: 1e-164; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 14 - 322
Target Start/End: Complemental strand, 28532805 - 28532497
Alignment:
| Q |
14 |
gagatgacgccttatgtcaatttggagatcttccggcaaattctcaagaagtgtttcttcattcactcctcttgttgccgcccaattataccgctcagcc |
113 |
Q |
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| T |
28532805 |
gagatgacgccttatgtcaatttggagatcttccggaaaattctcaagaagtgtttcttcattcactcctcttgttgccgcccaattataccgctcagcc |
28532706 |
T |
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| Q |
114 |
tgttgtactctcctgcatgaaattcatatttatcacttgcacaatggttctgtttggataaaatgcgtaatcaaacgtttatagcataaaaacttattaa |
213 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28532705 |
tgttgtactctcctgcatgaaattcatatttatcacttgcacaatggttctgtttggataaaatgcgtaatcaaacgtttatagcataaaaacttattaa |
28532606 |
T |
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| Q |
214 |
taatcattgacttgcagaaattgacagatagtctaattcacagttcatgtgtgattcatcagaagaattagagcatttaatttcataccttttgagatct |
313 |
Q |
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||||||||||||||||||||||||||||||| |||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
28532605 |
taatcattgacttgcagaaattgacagatagactaattcacaattcatgtgtgattcgtcagaagaattagagcatttaatttcataccttttgagatct |
28532506 |
T |
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| Q |
314 |
tcaggtaac |
322 |
Q |
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||||||||| |
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| T |
28532505 |
tcaggtaac |
28532497 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 39 - 131
Target Start/End: Complemental strand, 27896617 - 27896525
Alignment:
| Q |
39 |
agatcttccggcaaattctcaagaagtgtttcttcattcactcctcttgttgccgcccaattataccgctcagcctgttgtactctcctgcat |
131 |
Q |
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| T |
27896617 |
agatcttctggcaaattctccatgagtatttcttcattcactcctctcgttgcagcccagttgtaacgttcagcttgtcgcactctcctgcat |
27896525 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 14 - 133
Target Start/End: Complemental strand, 28033905 - 28033786
Alignment:
| Q |
14 |
gagatgacgccttatgtcaatttggagatcttccggcaaattctcaagaagtgtttcttcattcactcctcttgttgccgcccaattataccgctcagcc |
113 |
Q |
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||||||||| | |||||| | ||||||||||| ||||||||||| |||| ||| ||| || ||||||||||| |||||| ||||| | |||||| |
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| T |
28033905 |
gagatgacgtcgtatgtctgtctggagatcttctggcaaattctccagaaccattttctcagaaacacctcttgttgcagcccaactatactgttcagcc |
28033806 |
T |
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| Q |
114 |
tgttgtactctcctgcatga |
133 |
Q |
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||| |||||||||||||||| |
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| T |
28033805 |
tgtcgtactctcctgcatga |
28033786 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 17 - 133
Target Start/End: Complemental strand, 28000309 - 28000193
Alignment:
| Q |
17 |
atgacgccttatgtcaatttggagatcttccggcaaattctcaagaagtgtttcttcattcactcctcttgttgccgcccaattataccgctcagcctgt |
116 |
Q |
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|||||| | |||||| |||||||||||||| ||||||||||| | || ||| ||| || || |||||||| |||||| ||||||| |||||||| |
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| T |
28000309 |
atgacgtcgtatgtctatttggagatcttctggcaaattctccaaaatcattttctcagaaacaccccttgttgcagcccaactataccgttcagcctgc |
28000210 |
T |
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| Q |
117 |
tgtactctcctgcatga |
133 |
Q |
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|||||||||||||||| |
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| T |
28000209 |
cgtactctcctgcatga |
28000193 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 84 - 133
Target Start/End: Complemental strand, 28090151 - 28090102
Alignment:
| Q |
84 |
cttgttgccgcccaattataccgctcagcctgttgtactctcctgcatga |
133 |
Q |
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|||||||| |||||| ||||||| |||||||| |||||||||||||||| |
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| T |
28090151 |
cttgttgcagcccaactataccgttcagcctgacgtactctcctgcatga |
28090102 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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