View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4681_low_36 (Length: 338)
Name: NF4681_low_36
Description: NF4681
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4681_low_36 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 323; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 323; E-Value: 0
Query Start/End: Original strand, 16 - 338
Target Start/End: Complemental strand, 38543515 - 38543193
Alignment:
| Q |
16 |
tgtttacctgaagttttttgtgttttgctgtaaaagaaaaagagacttgagagagatgacatctgggttagtattaagaagaagatattcaacccaaccc |
115 |
Q |
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| T |
38543515 |
tgtttacctgaagttttttgtgttttgctgtaaaagaaaaagagacttgagagagatgacatctgggttagtattaagaagaagatattcaacccaaccc |
38543416 |
T |
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| Q |
116 |
acatcaccgtttgtaccaataattttgcttccatacccaaaaggatcaggtggacctgctttctctttctctaactgaggttgtccaaaaaatttgagtg |
215 |
Q |
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| T |
38543415 |
acatcaccgtttgtaccaataattttgcttccatacccaaaaggatcaggtggacctgctttctctttctctaactgaggttgtccaaaaaatttgagtg |
38543316 |
T |
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| Q |
216 |
tttcattttctaaattggttatcaactctaacggaacttggtggttaacaaccttaaagaatccaaattctgtacatgcgttgactattagtgtcttagc |
315 |
Q |
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| T |
38543315 |
tttcattttctaaattggttatcaactctaacggaacttggtggttaacaaccttaaagaatccaaattctgtacatgcgttgactattagtgtcttagc |
38543216 |
T |
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| Q |
316 |
ttctgggtctgaaaggtcaacct |
338 |
Q |
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| T |
38543215 |
ttctgggtctgaaaggtcaacct |
38543193 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 61; Significance: 4e-26; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 54 - 186
Target Start/End: Original strand, 6314797 - 6314929
Alignment:
| Q |
54 |
aaagagacttgagagagatgacatctgggttagtattaagaagaagatattcaacccaacccacatcaccgtttgtaccaataattttgcttccataccc |
153 |
Q |
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| T |
6314797 |
aaagagacttgttagagataacatcagggttagtattaagaaggatatattcaacccaaccaacatcaccatttgaaccaattctcttacttccataacc |
6314896 |
T |
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| Q |
154 |
aaaaggatcaggtggacctgctttctctttctc |
186 |
Q |
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| T |
6314897 |
aaaaggatcaggaggaccagctctgtctttctc |
6314929 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 86 - 187
Target Start/End: Original strand, 29877904 - 29878005
Alignment:
| Q |
86 |
gtattaagaagaagatattcaacccaacccacatcaccgtttgtaccaataattttgcttccatacccaaaaggatcaggtggacctgctttctctttct |
185 |
Q |
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| T |
29877904 |
gtattgagaagaaggtattcaacccaaccaacatcaccattgggtccaatccttttgttaccatacccaaatggatttgcaggaccagctttttctttct |
29878003 |
T |
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| Q |
186 |
ct |
187 |
Q |
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|| |
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| T |
29878004 |
ct |
29878005 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 90 - 180
Target Start/End: Complemental strand, 21569540 - 21569450
Alignment:
| Q |
90 |
taagaagaagatattcaacccaacccacatcaccgtttgtaccaataattttgcttccatacccaaaaggatcaggtggacctgctttctc |
180 |
Q |
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| T |
21569540 |
taagaagaagatattcaacccaaccaatatcaccattttgtccaattttcttgttaccatacccaaatggattagctggtcctgctttctc |
21569450 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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